| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4266888 = | NA (NA) | 7 (0.090) | 7/164 | NT | NA | noncoding (1/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4266918 = | NA (NA) | noncoding (31/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
GTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4266992‑4266888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTG > NC_000913/4266918‑4267014 GTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCAT > 1:1883398/1‑100 TACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATC > 1:1767292/1‑100 TACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATC > 1:1777133/1‑100 ACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCC < 2:1954013/100‑1 ACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATC > 1:690188/1‑99 CATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCG < 1:1327327/100‑1 CATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCG > 2:1225155/1‑100 CATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGACGGATAAGGCATTCACGCCGAATCCG > 1:1128966/1‑100 CATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTAATTGGCCGGATAAGGCATTAACGCCGCATCCG > 2:2082034/1‑100 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC < 2:897360/100‑1 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC < 1:1084522/100‑1 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC > 2:667458/1‑100 TCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC > 2:328717/1‑100 CACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTTAACGGATAAGGCATTTACGCCGCATCCCGACAACAAAATC > 1:345722/1‑99 GGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTG > 2:2240255/1‑100 TTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCT > 1:652265/1‑100 ATTGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGG > 1:1667351/1‑100 TGGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCG > 2:1135856/1‑100 GGCCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGG > 1:2011775/1‑100 CCGGATAAGGCATTCACGCCGCATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGAT > 1:1157324/1‑100 ATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCAC > 1:1212965/1‑100 CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC < 1:398799/100‑1 CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC > 2:1096921/1‑100 CCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTC > 1:1706484/1‑100 CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCATTCT > 2:1873680/1‑100 CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCT > 1:670989/1‑100 CGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCT > 2:1423248/1‑100 GGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTG < 2:2011753/100‑1 GGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTG < 1:1135866/100‑1 GTACATCCGCCAGAGGCACGACCTTTATAAGAGCATGAAAGAACATCAACTTATTGAATTTTTAGGATTTTATTGGCCGGATAAGGCATTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4266992‑4266888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGATGTACGTTTGTCATGAGTCTCACTCTG > NC_000913/4266918‑4267014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |