BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4266888 =	NA (NA)	7 (0.090)	7/164	NT	NA	noncoding (1/97 nt)	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	4266918 =	NA (NA)	7 (0.090)	7/164	NT	NA	noncoding (31/97 nt)	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 142 total aligned reads displayed.

AATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGA  >  NC_000913/4266789‑4266987

  cagagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGcc                                                                                                   <  1:1135866‑M1/3‑1 (MQ=255)

   gACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCg                                                                                                  >  2:1341723/1‑100 (MQ=255)

   agagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCg                                                                                                  >  1:670989‑M1/97‑100 (MQ=255)

   agaatgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCg                                                                                                  >  2:1873680‑M1/97‑100 (MQ=255)

    gagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCgg                                                                                                 <  1:398799‑M1/5‑1 (MQ=255)

    gagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCgg                                                                                                 >  2:1096921‑M1/96‑100 (MQ=255)

    gagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCgg                                                                                                 >  1:1706484‑M1/96‑100 (MQ=255)

     cGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                >  1:1883033/1‑100 (MQ=255)

     cGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                >  1:1817969/1‑100 (MQ=255)

     cGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                <  1:1690003/100‑1 (MQ=255)

      gtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGAt                                                                                               >  1:1212965‑M1/94‑100 (MQ=255)

      gAAAGTAAGCGCTGACGAATTTATTACTCTCCTCACTTCAAGGGTCTCTATGAAATACGTAGATTAATCGTTCTGTAATATTTTATTGTCTGTGcc                                                                                                   <  2:1989675/96‑1 (MQ=255)

            aaGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgtccgt                                                                                         >  2:1922194/1‑95 (MQ=255)

            aaGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcggcg                                                                                         >  1:2071385/1‑100 (MQ=255)

            aaGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcggcg                                                                                         <  2:2314114/100‑1 (MQ=255)

            aaGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAAACGTTCTGTAATATTTGATTGTCTGTGCCGGATgcggcg                                                                                         <  2:1472639/100‑1 (MQ=255)

              gcgcTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTg                                                                                       <  2:762638/100‑1 (MQ=255)

              gcgcTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTg                                                                                       <  2:1019401/100‑1 (MQ=255)

                 cTTACTAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGaa                                                                                     <  1:111223/99‑1 (MQ=255)

                 cTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAAt                                                                                    <  1:956337/100‑1 (MQ=255)

                   tACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGc                                                                                  >  2:961176/1‑100 (MQ=255)

                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 <  1:65846/100‑1 (MQ=255)

                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 >  2:1663692/1‑100 (MQ=255)

                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 <  2:49087/100‑1 (MQ=255)

                     cGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 <  2:1792856/99‑1 (MQ=255)

                     cGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCt                                                                                <  2:1493263/100‑1 (MQ=255)

                     cGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCt                                                                                <  2:1335147/100‑1 (MQ=255)

                     cGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCt                                                                                <  1:1474872/100‑1 (MQ=255)

                      gAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCtt                                                                               >  2:964786/1‑100 (MQ=255)

                        aCTTATTCCGAGCCTGGCTTGTAGGGTTGCGATGAAATACTTGGATTAAGCGTGCTGTAATATTTGATTGTCTGTGTCGGATGCGGCGTGAATGcc                                                                                 <  2:1076004/96‑1 (MQ=255)

                         cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATc                                                                            <  2:210898/100‑1 (MQ=255)

                           tattaCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCg                                                                          >  1:2373326/1‑100 (MQ=255)

                            attaCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCgg                                                                         <  1:2096239/100‑1 (MQ=255)

                            atccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCgg                                                                         >  1:1157324‑M1/72‑100 (MQ=255)

                              taCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                       <  2:1162004/100‑1 (MQ=255)

                              taCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                       <  2:2040379/100‑1 (MQ=255)

                              taCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                       <  2:910832/100‑1 (MQ=255)

                               aCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTTGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCa                                                                      <  2:189817/100‑1 (MQ=255)

                               aCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCa                                                                      >  2:911760/1‑100 (MQ=255)

                               aCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCa                                                                      >  2:1732754/1‑100 (MQ=255)

                               aCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGAGGCGTGAATGCCTTATCCGGCCa                                                                      >  2:1267630/1‑100 (MQ=255)

                                  cgcCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAAAATTTGTTTGTCTGTACCGGATACGGCGTGAATGACTTATCCGGCCAATa                                                                   >  2:1530425/1‑100 (MQ=255)

                                     aggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATaaaa                                                                >  1:652265‑M1/63‑100 (MQ=255)

                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               <  1:882679/100‑1 (MQ=255)

                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               <  1:1565260/100‑1 (MQ=255)

                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               >  1:16505/1‑100 (MQ=255)

                                        aCTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATcc                                                             <  1:1871389/100‑1 (MQ=255)

                                        aCTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAAAAAAATcc                                                             <  2:659881/100‑1 (MQ=255)

                                           tCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaa                                                          >  1:563140/1‑100 (MQ=255)

                                           tCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaa                                                          >  2:1217641/1‑100 (MQ=255)

                                               gggTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAAt                                                      <  2:1105652/100‑1 (MQ=255)

                                                 gTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTc                                                    <  2:53052/100‑1 (MQ=255)

                                                  ttttgATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCa                                                   <  2:1735099/96‑1 (MQ=255)

                                                  tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCa                                                   <  2:214137/100‑1 (MQ=255)

                                                  tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCa                                                   <  1:478140/100‑1 (MQ=255)

                                                  tCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGAGTGAATGCCTTATCCGGTCAATAAAATCCTAAAAATTCa                                                   <  2:1144736/100‑1 (MQ=255)

                                                       aTGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAg                                              <  2:239106/100‑1 (MQ=255)

                                                        tGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGt                                             >  2:1715206/1‑100 (MQ=255)

                                                             tACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATg                                        >  2:56224/1‑100 (MQ=255)

                                                              aCGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGt                                       <  1:2283338/100‑1 (MQ=255)

                                                               cGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCGAATAAGATCCTAAAAATTCAGTAAGTTGATGtt                                      >  2:1302836/1‑100 (MQ=255)

                                                               cGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTTATGtt                                      >  2:793403/1‑100 (MQ=255)

                                                               cGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGtt                                      >  1:331855/1‑100 (MQ=255)

                                                                gTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTc                                     <  1:960735/100‑1 (MQ=255)

                                                                gTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTc                                     >  1:1009712/1‑100 (MQ=255)

                                                                  ggATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCtt                                   >  1:342231/1‑100 (MQ=255)

                                                                  ggATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCtt                                   >  1:1117329/1‑100 (MQ=255)

                                                                   gATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCttt                                  <  2:4898/100‑1 (MQ=255)

                                                                   gATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCttt                                  >  2:1506471/1‑100 (MQ=255)

                                                                   gATTAATCGTTCTGTAATATTTGATCGTCTGTGCCGGATGCTGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCttt                                  <  2:1792347/100‑1 (MQ=255)

                                                                    aTTAATCGTTCTGTAATATTTGATTGTCTGTGCCTGATGCGGCGTTAATGCCTTATCCGGCCAATCAAATCCTAAAAATTCAATAAGTTGATGTCCttt                                  >  2:1993375/1‑99 (MQ=38)

                                                                    aTTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTc                                 <  2:1869926/100‑1 (MQ=255)

                                                                     ttAATCTTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCa                                <  1:794589/100‑1 (MQ=255)

                                                                     ttAATCGTTCTGTAATATTTGATTGTCTGTGCCGTATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTCATGTTCTTTCa                                <  2:1255545/100‑1 (MQ=255)

                                                                     ttAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCa                                <  2:824329/100‑1 (MQ=255)

                                                                        aTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGACTTATCAGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGc                             >  2:602799/1‑100 (MQ=255)

                                                                           gtgcTGTAATATTTGATTGTCTGTGCAGAATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAATTTGATGTTCTTTCATGctct                          <  2:1045148/97‑1 (MQ=39)

                                                                           gTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctct                          <  2:2373298/100‑1 (MQ=255)

                                                                           gTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctct                          >  1:1604055/1‑100 (MQ=255)

                                                                            ttCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCtt                         <  2:1450280/100‑1 (MQ=255)

                                                                            ttCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCtt                         <  1:1217652/100‑1 (MQ=255)

                                                                             tCTGTAATATTTTATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTta                        <  1:8848/100‑1 (MQ=255)

                                                                             tCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTta                        <  2:446802/100‑1 (MQ=255)

                                                                                gTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATaa                     >  2:1499362/1‑100 (MQ=255)

                                                                                   atatTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAgg                  >  1:67607/1‑100 (MQ=255)

                                                                                    tatTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGt                 <  2:520506/100‑1 (MQ=255)

                                                                                     atTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTc                >  2:398796/1‑100 (MQ=255)

                                                                                     atTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTc                >  1:1015996/1‑100 (MQ=255)

                                                                                        tGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTg             <  1:389724/100‑1 (MQ=255)

                                                                                         gATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGc            <  1:343912/100‑1 (MQ=255)

                                                                                          aTTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGTCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGcc           <  2:535136/100‑1 (MQ=255)

                                                                                          aTTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGcc           <  1:93683/100‑1 (MQ=255)

                                                                                          aTTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGcc           <  1:1656391/100‑1 (MQ=255)

                                                                                           ttGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCct          >  1:1066929/1‑100 (MQ=255)

                                                                                               cTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTgg      >  2:1149230/1‑100 (MQ=255)

                                                                                                 gtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCg    <  2:1801827/100‑1 (MQ=255)

                                                                                                 gtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCg    <  2:2253375/100‑1 (MQ=255)

                                                                                                   GCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa  >  2:667458‑M1/1‑100 (MQ=255)

                                                                                                   GCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa  >  2:328717‑M1/1‑100 (MQ=255)

                                                                                                   GCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa  <  1:1084522‑M1/100‑1 (MQ=255)

AATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGA  >  NC_000913/4266789‑4266987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.