New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4103511 =NA (NA)6 (0.060) 5/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4103616‑4103511
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTA  >  NC_000913/4103544‑4103642
                                                                                                                                                                                                             
TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTA                                                                                                           <  2:497441/100‑1
 ATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGACATTTAAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTAT                                                                                                          >  1:805302/1‑100
  TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATC                                                                                                         >  2:428909/1‑100
  TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATACCTGATGCGACGCTGATAGCGTCTTATC                                                                                                         >  1:2515371/1‑100
   AAGCGGAGTTAAACTTTGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCA                                                                                                        <  2:1767770/100‑1
   AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCA                                                                                                        <  1:707031/100‑1
    AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTTATGCGACGCTGATAGCGTCTTATCAG                                                                                                       <  1:1840668/100‑1
    AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTAAGCAGGATACCTGATGAGACGCTGATAGCGTCTTATCAG                                                                                                       >  1:1073850/1‑100
     GCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGG                                                                                                      <  2:1600220/100‑1
      CGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCGGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCTTCTTATCAGGC                                                                                                     >  2:2661581/1‑100
                                                                     GGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGACGTAAACACCTTATACTACCTGCAAATGCGAAGTTTAAC                                      >  1:2029339/1‑100
                                                                       ATGCCTGATGCGACGCTGATAGCGTATTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTAAACTGCCTGCAAATGCGAAGTTTAACT                                     >  2:1124147/1‑99
                                                                         GCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG                                  >  1:462753/1‑100
                                                                         GCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG                                  >  2:1476335/1‑100
                                                                             GATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTA                              >  1:1468305/1‑100
                                                                               TGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATA                            >  1:1681132/1‑100
                                                                                                   ATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCA        >  1:1201410/1‑100
                                                                                                   ATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATACGAAGTTTAACTCCGCTTATACAGCGACAACCAAATAACCA        >  2:2492157/1‑100
                                                                                                    TCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAG       <  2:1294981/100‑1
                                                                                                     CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      <  2:2285412/100‑1
                                                                                                     CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      <  1:860886/100‑1
                                                                                                     CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      >  1:2785909/1‑100
                                                                                                     CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      <  1:1918421/100‑1
                                                                                                       GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    <  2:2261293/100‑1
                                                                                                       GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    >  2:952085/1‑100
                                                                                                        GCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGT   <  2:114792/100‑1
                                                                                                        GCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGT   >  1:940612/1‑100
                                                                                                         CATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTA  >  2:2932080/1‑100
                                                                                                                                                                                                             
TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4103616‑4103511
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTA  >  NC_000913/4103544‑4103642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.