New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4103511 =NA (NA)6 (0.060) 5/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 159 total aligned reads displayed.

ATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG  >  NC_000913/4103412‑4103610
                                                                                                   |                                                                                                   
tacggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatg                                                                                                     >  2:2932080‑M1/100‑100 (MQ=255)
 tCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGAGAAAATAACCCCCGGAGTGTAGGc                                                                                                    >  1:679550/1‑100 (MQ=255)
 acggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGc                                                                                                    <  2:114792‑M1/2‑1 (MQ=255)
  cggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGcc                                                                                                   >  2:952085‑M1/98‑100 (MQ=255)
  cggctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGcc                                                                                                   <  2:2261293‑M1/3‑1 (MQ=255)
  cGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGcc                                                                                                   <  2:2082241/100‑1 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGATCGGCAAGATCGAAGATTTTTCCAGCCGGTTATGGGGAAAATAACCCCCGGAGTGTAGGcc                                                                                                   >  1:1770962/1‑99 (MQ=255)
   gAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCt                                                                                                  >  2:1902406/1‑100 (MQ=255)
    gctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTg                                                                                                 <  1:1918421‑M1/5‑1 (MQ=255)
    gctggtgatttggttgccgctgtataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTg                                                                                                 >  1:2785909‑M1/96‑100 (MQ=255)
    aaaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTg                                                                                                 <  1:998413/100‑1 (MQ=255)
    aaaaGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTg                                                                                                 >  1:951784/1‑100 (MQ=255)
      tggttatttggttgtcgctgtataagcggagttaaacttcgtatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGAt                                                                                               >  2:2492157‑M1/94‑100 (MQ=255)
       aGCTGTACGCGGACTATTCAAAAGCTCCTACTTAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATa                                                                                              <  1:2323608/100‑1 (MQ=255)
        gCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGAtgc                                                                                             >  2:604598/1‑98 (MQ=255)
        gCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATa                                                                                              <  2:2797228/99‑1 (MQ=255)
          tGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCACCGGAGTGTAGACCTGATAAg                                                                                            >  1:1166725/1‑99 (MQ=255)
           ggACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGa                                                                                           >  2:2032766/1‑99 (MQ=255)
            gACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACg                                                                                         <  1:985724/100‑1 (MQ=255)
             aCGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGc                                                                                        >  2:305921/1‑100 (MQ=255)
              cgcgGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGACCTGATAAGACGCt                                                                                       >  1:1662294/1‑100 (MQ=255)
               gcgGACGATGCAAAAGCGCTGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTa                                                                                      <  1:375113/100‑1 (MQ=255)
                cgGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTAt                                                                                     <  1:2159309/100‑1 (MQ=255)
                cgGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTAt                                                                                     <  1:1024259/100‑1 (MQ=255)
                  gACGATGCAAAAGCGCCGACTGAGCTGCTAGATCTAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATc                                                                                    <  1:374250/99‑1 (MQ=255)
                     gATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCg                                                                                >  1:1294993/1‑100 (MQ=255)
                      aTGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGt                                                                               >  1:2914105/1‑100 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                              <  2:268622/100‑1 (MQ=255)
                       tGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTc                                                                              <  1:229442/100‑1 (MQ=255)
                          tataagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCa                                                                           >  1:1681132‑M1/74‑100 (MQ=255)
                           aaaGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCAt                                                                          >  1:1442908/1‑100 (MQ=255)
                            taagcggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATc                                                                         >  1:1468305‑M1/72‑100 (MQ=255)
                             aGCGCCGACTGATCGGTAATATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATc                                                                         <  1:593904/99‑1 (MQ=255)
                              gcgcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAg                                                                       >  2:1155362/1‑100 (MQ=255)
                               cgcCGACTGAGCGGCAAGATCGAAGATTTTTCCCGTCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAgg                                                                      <  1:1111976/100‑1 (MQ=255)
                                cggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGc                                                                     >  2:1476335‑M1/68‑100 (MQ=255)
                                cggagttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGc                                                                     >  1:462753‑M1/68‑100 (MQ=255)
                                 ccGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCa                                                                    >  1:2807840/1‑100 (MQ=255)
                                 ccGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCa                                                                    <  1:667916/100‑1 (MQ=255)
                                   agttaaacttcgcatttgcaggcagtttaaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAATACGCTATCAGCGTCGCATCAGGCAt                                                                   >  2:1124147‑M1/65‑99 (MQ=255)
                                     cTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATAAGCGTCGCATCAGGCATCCt                                                                >  1:860849/1‑100 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                              <  2:1218877/100‑1 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                              >  1:2399157/1‑100 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                              >  2:133345/1‑100 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                              >  1:1599294/1‑100 (MQ=255)
                                       gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                              >  1:510217/1‑100 (MQ=255)
                                         gCGGCAAGATCGATGATTTTTTTCGTCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTc                                                            <  1:1035576/100‑1 (MQ=38)
                                           ggCAATATCGAAGATTTTTCCCGCTGGTTGTGGGGAATATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCaa                                                          <  1:1442007/100‑1 (MQ=255)
                                           ggCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATAAGCGTCGCAGCAGGCATCCAGCTcca                                                          >  2:2475816/1‑98 (MQ=37)
                                            gCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCa                                                           <  1:317444/98‑1 (MQ=255)
                                             cAAGATCGAAGTTTTTTCCCGTCGGTTGTGGGGAGAATAACCCGCGGTGTTTAGGGCTGATAAGTTGCTAGCAGCGTCGCATCAGGCATCCTGc                                                              >  2:1647959/1‑94 (MQ=255)
                                             cAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAAt                                                        <  2:2360064/100‑1 (MQ=255)
                                              aaGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATg                                                       >  2:1697711/1‑100 (MQ=255)
                                                gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGcc                                                     >  1:1826990/1‑100 (MQ=255)
                                                gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGcc                                                     >  2:343837/1‑100 (MQ=255)
                                                gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAAACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGcc                                                     >  1:1685802/1‑100 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                  >  2:860346/1‑100 (MQ=255)
                                                   cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGACATCCTGCTCAAATGCCGGa                                                  >  1:1986853/1‑100 (MQ=255)
                                                      aGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATg                                                >  1:63035/1‑99 (MQ=255)
                                                        aTTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcgg                                             <  1:1585177/100‑1 (MQ=255)
                                                         tttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggt                                            >  2:2808178/1‑99 (MQ=255)
                                                            ttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTa                                         <  1:346722/100‑1 (MQ=255)
                                                               ccgccgGTTGTGGGTAATATAACCCTCTGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAAc                                      <  1:1244561/100‑1 (MQ=25)
                                                               ccgccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAAc                                      >  2:2334759/1‑100 (MQ=255)
                                                                cgccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACg                                     >  1:1304719/1‑100 (MQ=255)
                                                                cgccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACg                                     <  2:1785026/100‑1 (MQ=255)
                                                                 gccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGc                                    >  2:823035/1‑100 (MQ=255)
                                                                 gccgGTTATGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGATATCAAAGTCGCATCAAGCATACTGCTCAAATGCCGGAAGCGGCGTAAACGc                                    >  2:1402610/1‑100 (MQ=25)
                                                                  ccgGTTGTGGGGAAAATAACCCCCGGATTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGcn                                   <  2:1451880/100‑2 (MQ=255)
                                                                  ccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGcc                                   <  2:1599275/100‑1 (MQ=255)
                                                                    ggTTGTGGGGAAAATAACCCCCGGAGTGTAGGCTTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGcc                                   <  1:891531/98‑1 (MQ=255)
                                                                      ttttgGGTAAATTATCCCTTGTAGTGTAGGCCTGATAAGAGGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTaaa                                       <  1:711723/89‑1 (MQ=21)
                                                                       tgtgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATc                              <  2:2780451/100‑1 (MQ=255)
                                                                         tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                            <  1:2228978/100‑1 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                           >  1:1205971/1‑100 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                           >  2:2557680/1‑100 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                           >  1:485467/1‑100 (MQ=255)
                                                                          ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTACCAGCGGTGCATCAGGCATCCTGCTCAAATGACGGATGCGGCGTAAACGCCTTATcctg                           <  2:765588/100‑1 (MQ=21)
                                                                          ggggAAAATAACCCCCGGAGTGTAGCCCTGATAAGACGCTCTCAGCGTCGCATCAGGCCTCCAACATAAATAACGGAAGAGGCGAAAACGACTTGTcc                             >  1:2793530/1‑98 (MQ=16)
                                                                           gggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgc                          >  1:2928279/1‑100 (MQ=255)
                                                                           gggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCCCATCAGGCATCCTGCTCCAATGCCGGATGCGGCGTCACAGCCTTCTcct                            >  1:2928288/1‑98 (MQ=25)
                                                                            ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                         >  2:2163149/1‑100 (MQ=255)
                                                                            ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                         <  1:305924/100‑1 (MQ=255)
                                                                            ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                         >  1:1261892/1‑100 (MQ=255)
                                                                            ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgac                         >  2:1837172/1‑98 (MQ=255)
                                                                             gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcct                        <  1:819279/100‑1 (MQ=255)
                                                                             gAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCAGGATGCGGCGTAAACGCCTTATcctgcct                        >  2:2573865/1‑100 (MQ=255)
                                                                                aaTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCa                     >  1:86849/1‑100 (MQ=255)
                                                                                  tAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCaaa                   >  1:2945942/1‑100 (MQ=255)
                                                                                     cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                >  1:1529975/1‑100 (MQ=255)
                                                                                     cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                >  2:425619/1‑100 (MQ=255)
                                                                                     cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATACGGCGTAAACGCCTTATCCTGCCTGCAAATGc                >  1:2501631/1‑100 (MQ=255)
                                                                                      ccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAGCGCCTTATCCTGCCTGCAAATGCg               <  2:367111/100‑1 (MQ=255)
                                                                                            aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGTATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCTTGCCTGCAAATGCGAAGtt          <  2:574559/99‑1 (MQ=255)
                                                                                            aGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGttt         <  1:169138/100‑1 (MQ=255)
                                                                                             gtgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTa        <  1:2517960/100‑1 (MQ=255)
                                                                                              tgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTaa       <  2:729932/100‑1 (MQ=255)
                                                                                               gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc      <  2:2198975/100‑1 (MQ=255)
                                                                                                  ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc   >  1:1497268/1‑100 (MQ=255)
                                                                                                  ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc   >  2:1369944/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
ATCGAAAAGCTGGACGCGGACGATGCAAAAGCGCCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCG  >  NC_000913/4103412‑4103610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.