New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41766319 (0.080)3 (0.030) 3/168 NT 26.1% coding (688/1185 nt) tufB translation elongation factor EF‑Tu 2
?NC_000913 = 4176644 NA (NA)coding (701/1185 nt) tufB translation elongation factor EF‑Tu 2

CCTGGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4176528‑4176631
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccgCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCC  <  NC_000913/4176644‑4176546
                                                                                                                                                                                                           
CCTGGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTT                                                                                                         >  2:811597/1‑100
 CTGGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTA                                                                                                        >  1:534655/1‑100
  TGGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTAC                                                                                                       >  1:2768007/1‑100
  TGGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTAC                                                                                                       <  1:2647210/100‑1
   GGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACC                                                                                                      <  2:2118574/100‑1
   GGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACC                                                                                                      <  1:1685918/100‑1
      TTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGCG                                                                                                   >  1:154498/1‑100
                         gatCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGCGTTCTACACGACCGGTAACA                                                                                <  1:1128464/97‑1
                            CGTGCGATTGACAAGCCGTTCCTGCTGCCTATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGCGTTCTACACGACCGGTAACAACG                                                                             <  1:582799/100‑1
                                CGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGCGTTCTACACGACCGGTAACAACGGTAC                                                                         <  1:1670253/100‑1
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGATAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      >  2:1329761/1‑100
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      >  2:31846/1‑100
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      <  2:2349206/100‑1
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      >  1:627217/1‑100
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      <  2:1828222/100‑1
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACAACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      >  1:2143446/1‑100
                                                                                                   TACCGCGTTCTACACGACCGGTAACAACGGTACCACAACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      >  1:2143487/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  2:957583/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  2:957558/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  2:2952094/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  2:1519772/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  2:1516309/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  1:1088044/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGT     >  1:3007160/1‑100
                                                                                                    ACCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTG       >  2:68199/1‑98
                                                                                                     CCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCATCAGGAACGGCTTGTCAATCGCACGCTCTGGTT    >  1:290129/1‑100
                                                                                                     CCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTT    >  1:1245373/1‑100
                                                                                                     CCGCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGG      >  2:2546098/1‑98
                                                                                                     CCGCGTTCTACAAGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTT    >  1:1990971/1‑100
                                                                                                      CGCCTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTT    <  1:1329773/99‑1
                                                                                                       GCGTTCTACACGACCGGTGACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCC  <  1:2683656/100‑1
                                                                                                       GCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCC  >  2:54545/1‑100
                                                                                                                                                                                                           
CCTGGATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4176528‑4176631
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccgCGTTCTACACGACCGGTAACAACGGTACCACGACCGGAGATGGAGAATACGTCTTCGATCGGCAGCAGGAACGGCTTGTCAATCGCACGCTCTGGTTCC  <  NC_000913/4176644‑4176546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.