New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41766319 (0.080)3 (0.030) 3/168 NT 26.1% coding (688/1185 nt) tufB translation elongation factor EF‑Tu 2
?NC_000913 = 4176644 NA (NA)coding (701/1185 nt) tufB translation elongation factor EF‑Tu 2

GCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTAGAACGCGGTATCATCAAAGTTGGTG  >  NC_000913/4176570‑4176664
                                                                          |                    
gctgTTCCTCCTGCCTATCGACGTCTGATTTTCCATTCCCGGTCCTTGTACCGTTGTTACCGGTCGTGTAGAACGCGGTATCATCAAAGTTGGTg  <  2:1812059/92‑1 (MQ=0)
                                                                          |                    
GCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTAGAACGCGGTATCATCAAAGTTGGTG  >  NC_000913/4176570‑4176664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.