| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4176631 | 9 (0.080) | 3 (0.030) | 3/168 | NT | 26.1% | coding (688/1185 nt) | tufB | translation elongation factor EF‑Tu 2 |
| ? | NC_000913 | = 4176644 | NA (NA) | coding (701/1185 nt) | tufB | translation elongation factor EF‑Tu 2 | |||||
ATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTAGAACGCGGTATCATCAAAGTTGGTGAAGAAGTTGAAATCGTTGGTATCAAAGAGACTCAGAAGTCTACCTGTACTGGCGTTGAAATGTTCC > NC_000913/4176533‑4176730 | aTTCTTACATTCCGTAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCgg < 1:2367721/100‑1 (MQ=17)aTTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCgg < 2:931971/100‑1 (MQ=32)aTTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCgg < 1:2762558/100‑1 (MQ=32)aTTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCgg < 2:386588/100‑1 (MQ=33)aTTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCgg > 1:2069828/1‑100 (MQ=33) ttCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGcg > 1:154498‑M1/1‑98 (MQ=255) ttCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGt > 2:3019066/1‑100 (MQ=33) cTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGt > 2:500923/1‑98 (MQ=32) cTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCg < 1:611363/100‑1 (MQ=33) cTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCg > 1:1907516/1‑100 (MQ=32) cTTACATTCCGGAACCAGAGCGCGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCg > 2:2570627/1‑100 (MQ=17) ttACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCgt > 2:2932995/1‑100 (MQ=32) ttACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCgt < 2:1102748/100‑1 (MQ=33) tACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCgtg < 2:2496133/100‑1 (MQ=32) tACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCgtg > 2:1129495/1‑100 (MQ=32) aCATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCgtgt > 2:1163127/1‑100 (MQ=31) cATTCCGGAACCAGTGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTa < 1:1129506/100‑1 (MQ=11) cATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTa > 2:2335638/1‑100 (MQ=11) cATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTa > 2:160638/1‑100 (MQ=11) cATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTa > 1:1128676/1‑100 (MQ=11) cATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTa > 1:925089/1‑100 (MQ=11) gatcgtgCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGcgttctacacgaccggtaaca < 1:1128464‑M1/97‑22 (MQ=255) cGTGCGATTGACAAGCCGTTCCTGCTGCCTATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGcgttctacacgaccggtaacaacg < 1:582799‑M1/100‑25 (MQ=255) cGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGcgttctacacgaccggtaacaacggtac < 1:1670253‑M1/100‑29 (MQ=255) gctgTTCCTCCTGCCTATCGACGTCTGATTTTCCATTCCCGGTCCTTGTACCGTTGTTACCGGTCGTGTAGAACGCGGTATCATCAAAGTTGGTg < 2:1812059/92‑1 (MQ=0) tACCGcgttctacacgaccggtaacaacggtaccacgaccggagatggataatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg > 2:1329761‑M1/1‑5 (MQ=255) tACCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg > 1:627217‑M1/1‑5 (MQ=255) tACCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg > 2:31846‑M1/1‑5 (MQ=255) tACCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg < 2:1828222‑M1/100‑96 (MQ=255) tACCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg < 2:2349206‑M1/100‑96 (MQ=255) tACCGcgttctacacgaccggtaacaacggtaccacaaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg > 1:2143487‑M1/1‑5 (MQ=255) tACCGcgttctacacgaccggtaacaacggtaccacaaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg > 1:2143446‑M1/1‑5 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 2:957583‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 2:957558‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 1:1088044‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 2:2952094‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 2:1519772‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 2:1516309‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggt > 1:3007160‑M1/1‑4 (MQ=255) aCCGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctg > 2:68199‑M1/1‑4 (MQ=255) ccGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcatcaggaacggcttgtcaatcgcacgctctggtt > 1:290129‑M1/1‑3 (MQ=255) ccGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggtt > 1:1245373‑M1/1‑3 (MQ=255) ccGcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctgg > 2:2546098‑M1/1‑3 (MQ=255) ccGcgttctacaagaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggtt > 1:1990971‑M1/1‑3 (MQ=255) cgccttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggtt < 1:1329773‑M1/99‑98 (MQ=255) gcgttctacacgaccggtgacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggttcc < 1:2683656‑M1/100‑100 (MQ=255) gcgttctacacgaccggtaacaacggtaccacgaccggagatggagaatacgtcttcgatcggcagcaggaacggcttgtcaatcgcacgctctggttcc > 2:54545‑M1/1‑1 (MQ=255) | ATTCTTACATTCCGGAACCAGAGCGTGCGATTGACAAGCCGTTCCTGCTGCCGATCGAAGACGTATTCTCCATCTCCGGTCGTGGTACCGTTGTTACCGGTCGTGTAGAACGCGGTATCATCAAAGTTGGTGAAGAAGTTGAAATCGTTGGTATCAAAGAGACTCAGAAGTCTACCTGTACTGGCGTTGAAATGTTCC > NC_000913/4176533‑4176730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |