New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4344880	NA (NA)	4 (0.040)	4/166	NT	NA	noncoding (66/95 nt)	RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 4344908	NA (NA)					noncoding (94/95 nt)	RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP327 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

AAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGAccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4344782‑4344880 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTTA  <  NC_000913/4344908‑4344804                                                                                                                                                                                                              AAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTTATGTAATGCTTTGGATTTGCAAATTTTGTAGAC                                                                                                          >  2:102723/1‑100   AGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCG                                                                                                        >  2:1679288/1‑100    GCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGG                                                                                                       >  1:649552/1‑100     nCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGA                                                                                                      >  2:2398634/2‑100     CCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGG                                                                                                       <  2:606666/99‑1      CTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGAT                                                                                                     <  2:758929/100‑1      CTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGAT                                                                                                     <  1:2098858/100‑1      CTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGA                                                                                                      >  2:2119673/1‑99                                TGGTCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTATTGCTTTGGATTTGCAAATTTTGTAGACCGGATGCGGCGTGAATTCCTTATCCGGTCT                                                                            <  1:1799338/99‑1                                TGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATGCGGCGTGAATTCCTTATCCGGTCTA                                                                           <  1:1773459/100‑1                                   CCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATGCGGCGTGAATTCCTTATCCGGTCTACAA                                                                        <  1:2431790/100‑1                                        TGCTATATGTTTATCAGTCTACTTCTTTATGTAATGCTTTGGATTTGCAAATTTTGTAGACCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAAT                                                                     <  1:573668/98‑1                                                                                                     CGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTC      >  1:58574/1‑100                                                                                                       GATGCGTCGTGAATTCCTTATCCGGTCTACAAAATTTGTAAATCCAAAGCATTACATTAAGACGTGGCCTGATAATCATATCGCATCAGGCCATTTTCGT    <  2:358596/100‑1                                                                                                        ATGCGGCGTGAATTCCTTATTCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTT   <  1:1388149/100‑1                                                                                                        ATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTT   <  2:163330/100‑1                                                                                                        ATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTT   <  1:2927239/100‑1                                                                                                         TGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTTA  <  2:1050191/100‑1                                                                                                         TGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTTA  <  2:458750/100‑1                                                                                                         TGCGGCGTGAATGCCTTATCCGGTCTACAAAATTTGCAAATCCAAACCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTGCGTTA  <  2:1436450/100‑1                                                                                                                                                                                                              AAAGCCTGACGTGGACAATAGCTAACGAAAATGGCCTGATGCGATATGTTTATCAGGCCACGTCTTAATGTAATGCTTTGGATTTGCAAATTTTGTAGAccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4344782‑4344880 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACATTAAGACGTGGCCTGATAAACATATCGCATCAGGCCATTTTCGTTA  <  NC_000913/4344908‑4344804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.