New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4548883 =	102 (1.120)	7 (0.090)	5/160	NT	7.8%	coding (76/903 nt)	fimH	minor component of type 1 fimbriae
	?	NC_000913	4548916 =	73 (0.890)					coding (109/903 nt)	fimH	minor component of type 1 fimbriae
Rejected: Frequency below cutoff threshold.

GTCGAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4548989‑4548883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggcggtGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA  >  NC_000913/4548916‑4549013                                                                                                                                                                                                               GTCAAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCAT                                                                                                           >  1:1715569/1‑100    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        >  2:653357/1‑100    GAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGG                                                                                                        <  1:337891/100‑1     AAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGC                                                                                                       <  1:2381989/100‑1       AGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGG                                                                                                     >  2:1435083/1‑100        GATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT                                                                                                    >  1:945445/1‑100                                                                    CGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTC                                        >  2:2099706/1‑100                                                                        GCCACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGG                                    >  1:1831512/1‑100                                                                          CACCGCCAATAGGGATGGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAACACCTGTTCGTG                                     >  1:809935/1‑97                                                                          CACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGAT                                  >  1:1315894/1‑100                                                                           ACCGCCAATAGGGCTAGCGGTACGATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGGGAATGTGGGGCAAAACCTGGTGGTG                                     >  2:877569/1‑96                                                                           ACCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACGTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATC                                 >  1:1177450/1‑100                                                                            CCGCCAATAGGGATAGCGGTACCATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCT                                >  1:766507/1‑100                                                                                                  CATTGGCGCTGCCACCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCAT          >  1:1065590/1‑100                                                                                                        CGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGAT    <  1:1683624/100‑1                                                                                                         GGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATT   >  1:975016/1‑100                                                                                                          GTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA  <  2:1591776/100‑1                                                                                                                                                                                                               GTCGAAAGATCCACGACCAGGTTTTGCCCCACATTCACGACGGGCGCAAGGTTTACATAAACATTGGCGCTGCCACCGCCAATAGGGATAGCGGTACCATTGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4548989‑4548883 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attggcggtGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTA  >  NC_000913/4548916‑4549013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.