| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4585553 = | 128 (1.040) | 2 (0.020) | 5/166 | NT | 1.8% | coding (1209/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| ? | NC_000913 | 4585576 = | 101 (0.880) | coding (1186/3513 nt) | hsdR | endonuclease R Type I restriction enzyme | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AAACAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTGATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4585657‑4585553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataccAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGCC > NC_000913/4585576‑4585674 AAACAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATCCCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTG > 2:1432345/1‑100AAACAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTG > 2:1802821/1‑100AAACAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTG < 2:1608341/100‑1 CAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGCCCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTGATA > 2:2622369/1‑100 CAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAACAGCGGCATCTGGTATCGCG‑ACGTGCGTGATA > 2:3281976/1‑100 CAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTGATA > 2:2802676/1‑100 ACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGTCCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTGATACC < 1:2873624/100‑1 ACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTGATACC < 2:2109585/100‑1 GTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCACGCACGT‑CGCGATACCAGA < 1:1605474/100‑1 TTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCACGCACGT‑CGCGATACCAGAT < 1:1155869/100‑1 TAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCACGCACGT‑CGCGATACCAGATGC < 2:73586/100‑1 AAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCACGCACGT‑CGCGATACCAGATG < 1:388130/98‑1 GGTATCGCG‑ACGTGCGTGATACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGT > 2:1935982/1‑100 GATACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTC < 1:3111340/100‑1 ATACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCC < 1:708786/100‑1 ATACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCC < 2:575764/100‑1 TACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCT < 1:866051/100‑1 TACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCT < 2:462967/100‑1 ACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTG > 2:837930/1‑100 ACCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTG < 1:1180487/100‑1 CCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAGCCGTTGTTTGCCGCTGGTGTCCTG < 1:2216400/99‑1 CCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGC < 2:2594580/100‑1 CCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGC < 2:2594367/100‑1 CCAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGC > 1:3292278/1‑100 CAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGCC > 2:318046/1‑100 CAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGCC < 1:1263013/100‑1 AAACAACGGTTTAAAATCCCCTTCTGCTACTCGACCAACGGGCGCGAATACCGCGCAACAATGAAGACCAAAAGCGGCATCTGGTATCGCG‑ACGTGCGTGATACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4585657‑4585553‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataccAGATGCCGCTTTTGGTCTTCATTGTTGCGCGGTATTCGCGCCCGTTGGTCGAGTAGCAGAAGGGGATTTTAAACCGTTGTTTGCCGCTGGTGTCCTGCC > NC_000913/4585576‑4585674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |