Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,394,106 Δ1,938 bp IS5‑mediated [mppA]–ynaI [mppA], ynaI

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1394106 1397224–1396040 1935–3119 68 [3] [24] 27 [mppA]–insH1 [mppA], ynaI, insH1

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13941053 (0.050)65 (1.010) 49/198 0.3 95.6% coding (879/1614 nt) mppA murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit
?NC_000913 1396044 = NA (NA)noncoding (1/1195 nt) IS5 repeat region

ATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1394008‑1394105
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG  >  NC_000913/1396044‑1396142
                                                                                                                                                                                                     
ATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGG                                                                                                   <  2:557896/100‑1
 TATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGA                                                                                                  <  1:1084647/100‑1
 TATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGA                                                                                                  >  1:1397517/1‑100
  ATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAA                                                                                                 >  1:957023/1‑100
   TTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGA                                                                                                  >  2:307172/1‑98
     GATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGG                                                                                               >  1:1328812/1‑99
      ATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTG                                                                                             >  1:603764/1‑100
       TATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGC                                                                                            <  1:1083078/100‑1
        ATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCG                                                                                           <  1:1434714/100‑1
         TCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGA                                                                                          >  2:1075298/1‑100
         TCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGA                                                                                          >  2:1113012/1‑100
          CACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAA                                                                                         >  2:1545348/1‑100
           ACCGGATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAAC                                                                                        >  1:521826/1‑100
              GAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAG                                                                                     <  2:658518/100‑1
                  CCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCC                                                                                 <  2:624647/100‑1
                   CTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCT                                                                                >  1:297049/1‑100
                      CCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGAT                                                                             <  2:120703/100‑1
                      CCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGAT                                                                             <  1:1251513/100‑1
                       CCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATA                                                                            >  1:986673/1‑100
                        CGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATAT                                                                           >  1:1194121/1‑100
                         GAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATG                                                                          >  2:204300/1‑100
                           AAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAG                                                                        <  1:637478/100‑1
                             AATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGAn                                                                      <  2:1261103/100‑2
                              ATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATC                                                                     <  1:556231/100‑1
                               TATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCA                                                                    <  2:814222/100‑1
                                 TGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG                                                                  <  2:1335714/100‑1
                                    ATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT                                                               >  1:1241743/1‑100
                                    ATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT                                                               >  1:381238/1‑100
                                    ATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT                                                               <  2:118852/100‑1
                                     TCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG                                                              <  1:871672/100‑1
                                     TCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG                                                              <  1:892002/100‑1
                                          AGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAT                                                          >  1:930208/1‑99
                                            CTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG                                                       <  2:141761/100‑1
                                            CTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG                                                       <  1:228212/100‑1
                                                TGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC                                                   <  2:955309/100‑1
                                                TGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC                                                   >  1:380485/1‑100
                                                 GAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCa                                                  >  1:955314/1‑99
                                                 GAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC                                                  >  1:586660/1‑100
                                                  AAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCA                                                 >  2:1270444/1‑100
                                                   AGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCAT                                                >  1:346106/1‑100
                                                     GATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG                                              <  2:297184/100‑1
                                                     GATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG                                              <  2:398952/100‑1
                                                     GATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG                                              <  1:101690/100‑1
                                                     GATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG                                              <  1:497586/100‑1
                                                        ATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC                                           <  1:1201811/100‑1
                                                        ATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC                                           <  2:521825/100‑1
                                                          TCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG                                         <  1:1383313/100‑1
                                                          TCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG                                         <  1:1416870/100‑1
                                                           CCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG                                        >  1:1007861/1‑100
                                                           CCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG                                        >  2:312803/1‑100
                                                            CGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG                                       >  1:64343/1‑100
                                                               GGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTC                                    <  2:1366381/100‑1
                                                                      TTATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA                             >  1:1305619/1‑100
                                                                       TATACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAG                            <  2:298553/100‑1
                                                                          ACGCCGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCAGGAGCCATAGAACAGGGTTCATCATGAGTCA                         >  2:787833/1‑100
                                                                              CGCCGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAA                     <  1:967590/100‑1
                                                                                 CGCAGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTT                  <  2:346106/100‑1
                                                                                   CAGCTCGGGACATATGGAAGGTGCGAACAAGTCCCTGAGATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCA                      <  2:1449210/94‑1
                                                                                    AGCTCGGGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACC               >  2:544147/1‑100
                                                                                          GGACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCC         <  2:1022044/100‑1
                                                                                            ACCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA       <  2:681511/100‑1
                                                                                             CCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGAC      >  2:1244092/1‑100
                                                                                               TATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAG    >  1:1541928/1‑100
                                                                                               TATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAG    >  2:682406/1‑100
                                                                                                 TGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG  <  2:101117/100‑1
                                                                                                                                                                                                     
ATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1394008‑1394105
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTG  >  NC_000913/1396044‑1396142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.