| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,394,106 | Δ1,938 bp | IS5‑mediated | [mppA]–ynaI | [mppA], ynaI |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1394106 | 1397224–1396040 | 1935–3119 | 68 [3] | [24] 27 | [mppA]–insH1 | [mppA], ynaI, insH1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1394105 | 3 (0.050) | 65 (1.010) | 49/198 | 0.3 | 95.6% | coding (879/1614 nt) | mppA | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| ? | NC_000913 | 1396044 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
ATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTA > NC_000913/1394008‑1394204 | atatTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATgg < 2:557896‑M1/100‑3 (MQ=255) tatTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATgga < 1:1084647‑M1/100‑4 (MQ=255) tatTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATgga > 1:1397517‑M1/1‑97 (MQ=255) atTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaa > 1:957023‑M1/1‑96 (MQ=255) ttGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATgga > 2:307172‑M1/1‑95 (MQ=255) gATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaagg > 1:1328812‑M1/1‑93 (MQ=255) atatCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtg > 1:603764‑M1/1‑92 (MQ=255) atatCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGc > 2:1060696/1‑100 (MQ=255) tatCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgc < 1:1083078‑M1/100‑10 (MQ=255) atCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcg < 1:1434714‑M1/100‑11 (MQ=255) tCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcga > 2:1075298‑M1/1‑89 (MQ=255) tCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcga > 2:1113012‑M1/1‑89 (MQ=255) cACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaa > 2:1545348‑M1/1‑88 (MQ=255) aCCGGATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaac > 1:521826‑M1/1‑87 (MQ=255) gAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaag < 2:658518‑M1/100‑17 (MQ=255) ccTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccc < 2:624647‑M1/100‑21 (MQ=255) cTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccct > 1:297049‑M1/1‑79 (MQ=255) cccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgat < 1:1251513‑M1/100‑25 (MQ=255) cccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgat < 2:120703‑M1/100‑25 (MQ=255) ccGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgata > 1:986673‑M1/1‑75 (MQ=255) cGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatat > 1:1194121‑M1/1‑74 (MQ=255) cGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAgg < 2:153205/100‑1 (MQ=255) gAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatg > 2:204300‑M1/1‑73 (MQ=255) aaaaTATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgag < 1:637478‑M1/100‑30 (MQ=255) aaTATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagan < 2:1261103‑M1/100‑32 (MQ=255) atatGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatc < 1:556231‑M1/100‑33 (MQ=255) tatGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatca < 2:814222‑M1/100‑34 (MQ=255) tGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatg < 2:1335714‑M1/100‑36 (MQ=255) aTCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgttt > 1:381238‑M1/1‑62 (MQ=255) aTCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgttt < 2:118852‑M1/100‑39 (MQ=255) aTCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgttt > 1:1241743‑M1/1‑62 (MQ=255) tCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttg < 1:892002‑M1/100‑40 (MQ=255) tCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttg < 1:871672‑M1/100‑40 (MQ=255) aGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat > 1:930208‑M1/1‑56 (MQ=255) aGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAgcg < 2:497245/100‑1 (MQ=255) cTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 1:228212‑M1/100‑47 (MQ=255) cTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 2:141761‑M1/100‑47 (MQ=255) tGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc < 2:955309‑M1/100‑51 (MQ=255) tGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc > 1:380485‑M1/1‑50 (MQ=255) gAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:586660‑M1/1‑49 (MQ=255) gAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagca > 1:955314‑M1/1‑49 (MQ=255) aaGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca > 2:1270444‑M1/1‑48 (MQ=255) aGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:346106‑M1/1‑47 (MQ=255) gATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 2:297184‑M1/100‑56 (MQ=255) gATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 2:398952‑M1/100‑56 (MQ=255) gATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 1:101690‑M1/100‑56 (MQ=255) gATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag < 1:497586‑M1/100‑56 (MQ=255) atTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac < 1:1201811‑M1/100‑59 (MQ=255) atTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac < 2:521825‑M1/100‑59 (MQ=255) tCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:1383313‑M1/100‑61 (MQ=255) tCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:1416870‑M1/100‑61 (MQ=255) ccGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 1:1007861‑M1/1‑39 (MQ=255) ccGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 2:312803‑M1/1‑39 (MQ=255) cGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg > 1:64343‑M1/1‑38 (MQ=255) ggCAGGTTTATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc < 2:1366381‑M1/100‑66 (MQ=255) ttATACGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 1:1305619‑M1/1‑28 (MQ=255) tataCGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag < 2:298553‑M1/100‑74 (MQ=255) aCGCCGCCGCAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatcaggagccatagaacagggttcatcatgagtca > 2:787833‑M1/1‑24 (MQ=255) cgccgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa < 1:967590‑M1/100‑81 (MQ=255) cgcAGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt < 2:346106‑M1/100‑84 (MQ=255) cAGCTCGGGACATATggaaggtgcgaacaagtccctgagatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca < 2:1449210‑M1/94‑80 (MQ=255) aGCTCGGGACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc > 2:544147‑M1/1‑14 (MQ=255) ggACCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc < 2:1022044‑M1/100‑93 (MQ=255) aCCTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga < 2:681511‑M1/100‑95 (MQ=255) ccTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac > 2:1244092‑M1/1‑5 (MQ=255) tATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacag > 1:1541928‑M1/1‑3 (MQ=255) tATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacag > 2:682406‑M1/1‑3 (MQ=255) tggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg < 2:101117‑M1/100‑100 (MQ=255) | ATATTGATATCACCGAATCCTTCCCGAAAAATATGTATCAGAAGCTGTTGAAGGATATTCCGGGGCAGGTTTATACGCCGCCGCAGCTCGGGACCTATTATTATGCGTTTAACACGCAAAAAGGGCCGACGGCAGATCAGCGCGTTCGTCTGGCATTAAGTATGACGATAGATCGCCGCCTGATGACCGAAAAAGTA > NC_000913/1394008‑1394204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |