| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3214896 = | NA (NA) | 7 (0.050) | 5/168 | NT | NA | noncoding (5/33 nt) | REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3214925 = | NA (NA) | intergenic (+37/+42) | rpoD/mug | RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase | |||||
CTGGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3214999‑3214896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTT > NC_000913/3214925‑3215023 CTGGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATC < 1:1657499/100‑1CTGGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATC > 1:2319552/1‑100CTGGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATC > 2:1112945/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCCCCGAAAAGGTAGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 2:2000815/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 1:1810145/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 2:4071115/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 2:3929301/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 2:3872472/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 1:728755/1‑100 GGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCG > 2:2462544/1‑100 GACCAGGCGCTGGTAGTCCGTTGACGATAAAAAACGCCACCGAAAATGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG < 1:2318178/100‑1 ACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC > 2:1925329/1‑100 ACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC < 1:1921470/100‑1 ACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC > 2:2215222/1‑100 CCAGGCGCTGGTAGTGCGTGGGCGATAAAAACCGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGG < 2:4092596/98‑1 CCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCG > 1:145770/1‑100 AGTGCCGGGTGCGGCGTAACGCCTGATCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCT > 1:2925932/1‑100 AGTGCCGGGTGCGGCGTAACGCCTGATCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCT > 1:290032/1‑100 TGCCGGGTGCGGCGTAACGCCTGATCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGG > 2:3880295/1‑100 TGCCGGGTGCGGCGTAACGCCTGATCCGGCACTAGGCACTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGG > 2:2225335/1‑100 GCCGGGTGCGGCGTAACGCCTGATCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGT > 1:1382748/1‑100 CCGGGTGCGGCGTAACGCCTGATCCGGC‑CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCC > 1:728117/1‑100 CCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCA > 2:1564601/1‑100 CCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCA > 1:301180/1‑100 CCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCA > 1:2647420/1‑100 CGGCACTAGGCCCTCTGCACAAACGCCACCTGTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTGCAACCAG < 1:2187839/100‑1 GGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTTGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGT < 1:2272463/100‑1 GGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGT < 2:2294665/100‑1 GGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGT < 1:1263996/100‑1 GCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTT < 2:322738/100‑1 CACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTT > 1:2902045/1‑100 CTGGACCAGGCGCTGGTAGTGCGTGGGCGATAAAAAACGCCACCGAAAAGGTGGCGTTTGTGCAGAGGGCCTAGTGCCGGGTGCGGCGTAACGCCTGATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3214999‑3214896‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTT > NC_000913/3214925‑3215023 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |