New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3214896 =NA (NA)7 (0.050) 5/168 NT NA noncoding (5/33 nt) REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3214925 = NA (NA)intergenic (+37/+42) rpoD/mug RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase

Only 100 of 221 total aligned reads displayed.

GCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTC  >  NC_000913/3214826‑3215024
                                                                                                   |                                                                                                   
gcgcTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCa                                                                                                     <  2:882913/100‑1 (MQ=255)
  gcTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACt                                                                                                   >  1:2211340/1‑100 (MQ=255)
  aggcgctggtagtgcgtgggcgataaaaaacgccaccgaaaaggtggcgtttgtgcagagggcctagtGCCGGATCAGGCGTTACGCCGCACCCGGCACt                                                                                                   >  1:290032‑M1/69‑100 (MQ=255)
   cTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTa                                                                                                  <  1:3699979/100‑1 (MQ=255)
     cgctggtagtgcgtgggcgataaaaaacgccaccgaaaaggtggcgtttgtgcagagggcctagtGCCGGATCAGGCGTTACGCCGCACCCGGCACTAgg                                                                                                >  1:145770‑M1/66‑100 (MQ=255)
       gcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGcc                                                                                              <  1:694000/100‑1 (MQ=255)
          aaCTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCctc                                                                                           <  1:3547566/100‑1 (MQ=255)
              gCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGGCGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGca                                                                                       <  1:1492598/100‑1 (MQ=255)
              gCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcn                                                                                       <  2:1456694/100‑2 (MQ=255)
               cGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcac                                                                                      >  2:1263989/1‑100 (MQ=255)
               cGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcac                                                                                      <  1:995846/100‑1 (MQ=255)
                gTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcaca                                                                                     >  2:2381632/1‑100 (MQ=255)
                gTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcaca                                                                                     <  1:3171914/100‑1 (MQ=255)
                gTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcaca                                                                                     <  1:194402/100‑1 (MQ=255)
                gTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcaca                                                                                     <  1:563657/100‑1 (MQ=255)
                   aCCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACaaa                                                                                   >  2:2614472/1‑99 (MQ=255)
                   aCCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAAc                                                                                  >  1:3971539/1‑100 (MQ=255)
                   aCCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAAc                                                                                  >  1:433620/1‑100 (MQ=255)
                    cccGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACg                                                                                 >  1:1192824/1‑100 (MQ=255)
                    cccGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACg                                                                                 >  1:174539/1‑100 (MQ=255)
                      cGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGcc                                                                               <  2:1233488/100‑1 (MQ=255)
                       gAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCa                                                                              <  2:3519057/100‑1 (MQ=255)
                         gCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCAcc                                                                            <  1:1670593/100‑1 (MQ=255)
                          ccGTTCTGAAGTGCTGCGTAGCTTCCTGGCCGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCAGCCGGCACTAGCCCCTCTGCACAAACGCCACCt                                                                           >  2:2281319/1‑100 (MQ=255)
                            gTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCttt                                                                         >  1:184641/1‑100 (MQ=255)
                            gTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCttt                                                                         >  1:1590181/1‑100 (MQ=255)
                            gTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCttt                                                                         >  1:2093222/1‑100 (MQ=255)
                               cTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCg                                                                      >  1:527089/1‑100 (MQ=255)
                               cTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCg                                                                      <  1:3380465/100‑1 (MQ=255)
                                tGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCg                                                                      <  2:3871527/99‑1 (MQ=255)
                                 gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTccg                                                                     >  2:2972913/1‑97 (MQ=255)
                                 gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGt                                                                    <  2:160661/100‑1 (MQ=255)
                                 gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGt                                                                    >  1:1362942/1‑100 (MQ=255)
                                  aaGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCACACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTg                                                                   >  1:2874034/1‑100 (MQ=255)
                                   aGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTgg                                                                  <  2:1874287/100‑1 (MQ=255)
                                   aGTGCTGCGTAGCTTCCTGGACGACTAAGCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTgg                                                                  <  2:1539347/100‑1 (MQ=255)
                                    gTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGc                                                                 <  1:1245734/100‑1 (MQ=255)
                                    gTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGc                                                                 <  2:3202864/100‑1 (MQ=255)
                                        tgcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTATGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttt                                                             >  1:326191/1‑100 (MQ=255)
                                        tgcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttt                                                             >  2:3054234/1‑100 (MQ=255)
                                         gcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGtttt                                                            >  2:957359/1‑100 (MQ=255)
                                          cGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttttt                                                           <  2:3778181/100‑1 (MQ=255)
                                             aGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTAt                                                        <  2:1630497/100‑1 (MQ=255)
                                             aGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTAt                                                        <  1:2955992/100‑1 (MQ=255)
                                              gCTTCCTGGACGATTAATGGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATc                                                       <  1:3805930/100‑1 (MQ=255)
                                              gCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCATCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATc                                                       <  2:3115324/100‑1 (MQ=255)
                                               cTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCg                                                      <  2:3964955/100‑1 (MQ=255)
                                               cTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCg                                                      <  2:2683809/100‑1 (MQ=255)
                                                 tCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc                                                    <  1:202747/100‑1 (MQ=255)
                                                  ccTTGACTATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGc                                                     <  1:3902452/98‑1 (MQ=255)
                                                   cTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCa                                                  <  1:2395436/100‑1 (MQ=255)
                                                   cTGGACGATTAATCGGTAGGCCGCATCAGGCGTTCCGCCGCACCCGGCCCTAGGCCCTCTGCACACACGCCACCTTTTCGCTGGCGTCTTTTATCGCCCa                                                  >  2:1152334/1‑100 (MQ=255)
                                                     ggACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg                                                >  1:2662266/1‑100 (MQ=255)
                                                      gACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc                                               <  2:3872616/100‑1 (MQ=255)
                                                      gACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGCTTTTTATCCCACACGc                                               >  2:562200/1‑100 (MQ=255)
                                                       aCGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCCCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCa                                              <  2:2045363/100‑1 (MQ=255)
                                                            tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc                                         <  1:3227533/100‑1 (MQ=255)
                                                            tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc                                         <  1:2462499/100‑1 (MQ=255)
                                                             aaTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCACACCCACTACCa                                        >  2:3249124/1‑100 (MQ=255)
                                                              aTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACTCCGCCTTTTAGGTGGCGTTTTTTATCGCCCACGCACTACCAg                                       >  2:2925531/1‑100 (MQ=255)
                                                              aTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAg                                       <  1:3132487/100‑1 (MQ=255)
                                                              aTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAg                                       >  1:1540368/1‑100 (MQ=255)
                                                                cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCAGTGGCGTTTTTTATCGCCCACGCACTACCAgcg                                     <  2:2747721/100‑1 (MQ=255)
                                                                 ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcgc                                    >  1:1236173/1‑100 (MQ=255)
                                                                   tAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCt                                  <  1:1107026/100‑1 (MQ=255)
                                                                   agtgccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCt                                  >  1:2925932‑M2/33‑100 (MQ=255)
                                                                    aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg                                 <  1:3407923/100‑1 (MQ=255)
                                                                     tgccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg                                >  2:3880295‑M2/31‑100 (MQ=255)
                                                                     tgccgggtgcggcgtaacgcctgatccggcACTAGGCACTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg                                >  2:2225335‑M2/31‑100 (MQ=255)
                                                                     ggCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg                                <  2:3313851/100‑1 (MQ=255)
                                                                     ggCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg                                >  2:1712151/1‑100 (MQ=255)
                                                                     ggCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg                                <  2:1577/100‑1 (MQ=255)
                                                                     ggCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTgg                                >  1:2173877/1‑100 (MQ=255)
                                                                      gccgggtgcggCGTAACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTGCGGTGGCGTTTTTTTTCGCCCACGCACAACAAGCGCATgg                                >  1:3748822/10‑99 (MQ=255)
                                                                      GCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGt                               >  2:2215222‑M1/1‑100 (MQ=255)
                                                                      GCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGt                               >  2:1925329‑M1/1‑100 (MQ=255)
                                                                       ccgggtgcggcgtaacgcctgatccggc‑CTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc                             >  1:728117‑M2/29‑100 (MQ=255)
                                                                       CCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACATTTTCGGTGGCGTTTTTTATCGTCAACGGACTACCAGCGCCTGGTc                              <  1:2318178‑M1/100‑1 (MQ=255)
                                                                        CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc                             >  2:4071115‑M1/1‑100 (MQ=255)
                                                                        CGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc                             >  2:3929301‑M1/1‑100 (MQ=255)
                                                                          GATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg                           <  1:1657499‑M1/100‑1 (MQ=255)
                                                                          GATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg                           >  2:1112945‑M1/1‑100 (MQ=255)
                                                                           aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGc                          >  1:2706125/1‑100 (MQ=255)
                                                                               ggCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc                      <  1:3690819/100‑1 (MQ=255)
                                                                                     aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg                >  2:280236/1‑100 (MQ=255)
                                                                                      cgccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGc               >  1:3680840/1‑100 (MQ=255)
                                                                                       gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCTTGGTCCAGCTCGCGATACGCt              >  2:4135452/1‑100 (MQ=255)
                                                                                       gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt              >  1:259891/1‑100 (MQ=255)
                                                                                        ccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCtt             >  1:747928/1‑100 (MQ=255)
                                                                                          gcACCCGGCACTAGGCCCTGTGCACAAACGCCTCCTGTTCGGTGGCGTTTTTTTTCGCATACGCATTACCAGCGTCTGGTCCAGCTCGCGATACGCTTct           <  2:820606/100‑2 (MQ=255)
                                                                                          gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa           <  2:4045158/100‑1 (MQ=255)
                                                                                          gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa           >  1:4076157/1‑100 (MQ=255)
                                                                                          gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa           <  1:1712161/100‑1 (MQ=255)
                                                                                           cACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCaa          <  2:2556742/100‑1 (MQ=255)
                                                                                             cccGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAcc        >  1:152911/1‑100 (MQ=255)
                                                                                             cccGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAcc        >  2:2313033/1‑100 (MQ=255)
                                                                                              ccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa       >  1:301180‑M2/6‑100 (MQ=255)
                                                                                                 gcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGtt    <  2:322738‑M2/98‑1 (MQ=255)
                                                                                                  cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGttt   >  1:2902045‑M2/2‑100 (MQ=255)
                                                                                                   aCTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTtc  <  2:3822184/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTC  >  NC_000913/3214826‑3215024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.