New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 734168 =NA (NA)34 (0.240) 14/166 NT NA pseudogene (36/1521 nt) rhsO pseudogene, Rhs family
?NC_000913 734186 = NA (NA)pseudogene (54/1521 nt) rhsO pseudogene, Rhs family

Only 100 of 118 total aligned reads displayed.

GTTTGTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGT  >  NC_000913/734069‑734246
                                                                                                   |                                                                              
gTTTGTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCg                                                                                >  2:3128471/1‑100 (MQ=255)
  ttGTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGc                                                                              <  1:1048460/100‑1 (MQ=255)
  ttGTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGc                                                                              <  1:2840765/100‑1 (MQ=255)
    gTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAg                                                                            >  1:1688868/1‑100 (MQ=255)
     tATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAgg                                                                           <  2:515957/100‑1 (MQ=255)
     tATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAgg                                                                           <  1:1787197/100‑1 (MQ=255)
      aTTAAGTAAGCGGATTATAAACAAATAAATTAAGTTAATTGCTCTGTTTATTATATGTAACCTGGGCAGTGATATCCCGTATGCCACAGACGCGGCAggn                                                                          <  2:1724064/100‑2 (MQ=255)
      aTTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGt                                                                          >  1:3266032/1‑100 (MQ=255)
      aTTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGt                                                                          >  2:3852492/1‑100 (MQ=255)
       ttAAGTAAGCGCATTATAAACAAATAAATTGAGATAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGAGCCGGCAGGTa                                                                         >  2:2741511/1‑100 (MQ=255)
       ttAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTa                                                                         >  1:3160234/1‑100 (MQ=255)
        taagtaagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTaa                                                                        <  2:1421515/100‑1 (MQ=255)
        taagtaagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTaa                                                                        >  1:1460589/1‑100 (MQ=255)
         aagtaagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAAc                                                                       <  1:2856630/100‑1 (MQ=255)
          agtaagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCGGGGCATTGATAGCCCGTATGCCACAGACCCTGCAGGTAAcc                                                                      >  1:189050/1‑100 (MQ=255)
           gtaagCGCATTATAAACAAATAAATTAATTTAATTGCTCTTATTATTATATGTAACCTGGACATTGATCTTCCGTATGCCACAGACCCGGCAGGTAAcc                                                                      >  2:1945942/1‑99 (MQ=38)
             aagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGcc                                                                   <  1:2407187/100‑1 (MQ=255)
             aagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGcc                                                                   <  1:2197756/100‑1 (MQ=255)
             aagCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGcc                                                                   <  2:1187547/100‑1 (MQ=255)
              agCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCt                                                                  >  2:165136/1‑100 (MQ=255)
              agCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCt                                                                  >  1:4162175/1‑100 (MQ=255)
              agCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCt                                                                  >  1:1100621/1‑100 (MQ=255)
               gcgcATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTg                                                                 >  2:3729914/1‑100 (MQ=255)
               gcgcATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTg                                                                 >  2:2798695/1‑100 (MQ=255)
                cgcATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCCGGTAACCGCCtcc                                                                <  1:2825207/100‑3 (MQ=255)
                cgcATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGc                                                                >  2:2825191/1‑100 (MQ=255)
                 gcATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGcc                                                               >  1:2616309/1‑100 (MQ=255)
                  cATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGccc                                                              <  1:2075252/100‑1 (MQ=255)
                  cATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGccc                                                              <  2:1453328/100‑1 (MQ=255)
                   aTTATAAACAGATAAATTAAGTTACTTGCTCTTAGTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGccc                                                              <  2:1917178/99‑1 (MQ=255)
                   aTTATAAACAAATAAATTAATTTGAGTGCTCTTATTAGTATATGTAAACTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGccc                                                              <  2:3848764/99‑1 (MQ=37)
                   aTTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCg                                                             <  1:3986235/100‑1 (MQ=255)
                     tataAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGAc                                                           >  1:3078715/1‑100 (MQ=255)
                       taAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGACATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGAccc                                                         >  2:4168776/1‑100 (MQ=255)
                         aaCAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCgg                                                       <  2:1351907/100‑1 (MQ=255)
                          aCAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGa                                                      <  1:3196016/100‑1 (MQ=255)
                           cAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAg                                                     <  1:560763/100‑1 (MQ=255)
                           cAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAg                                                     <  1:2169848/100‑1 (MQ=255)
                           cAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAg                                                     >  1:993438/1‑100 (MQ=255)
                            aaataaatTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGc                                                    <  1:1167125/100‑1 (MQ=255)
                            aaataaatTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGc                                                    <  1:2676893/100‑1 (MQ=255)
                            aaataaatTAAGTTAATTGCGATTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGc                                                    <  1:2725410/100‑1 (MQ=255)
                             aataaatTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCt                                                   <  1:1879358/100‑1 (MQ=255)
                             aataaatTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCt                                                   <  1:3460927/100‑1 (MQ=255)
                             aataaatTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCt                                                   >  1:3370542/1‑100 (MQ=255)
                                  atTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCAcc                                              <  1:1301385/100‑1 (MQ=255)
                                  atTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATCCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCAcc                                              <  1:2399833/100‑1 (MQ=255)
                                   ttAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCAccc                                             <  1:1738515/100‑1 (MQ=255)
                                     gatctAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCgg                                           <  2:1104766/96‑1 (MQ=255)
                                     aaGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCgg                                           >  2:3620410/1‑100 (MQ=255)
                                      aGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGa                                          >  2:2797982/1‑100 (MQ=255)
                                       gTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGAc                                         >  1:2967157/1‑100 (MQ=255)
                                       gTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGAc                                         >  1:194017/1‑100 (MQ=255)
                                       gTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGAc                                         >  2:1691848/1‑100 (MQ=255)
                                       gTTAATTGCTCTTATTAGTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGAc                                         <  1:1453679/100‑1 (MQ=255)
                                         tAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAg                                       >  2:729534/1‑100 (MQ=255)
                                         tAATTCCTCTTATTATTATATGTAACCTGGGCATTGATACCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAg                                       <  2:2153111/100‑1 (MQ=255)
                                          aaTTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGagatc                                      >  1:1104771/1‑96 (MQ=255)
                                              gCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCAccc                                  >  1:2600361/1‑100 (MQ=255)
                                               ctctTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCt                                 >  1:240660/1‑100 (MQ=255)
                                                tctTATTATTATATGTAACCTGGGCATTTATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTc                                <  1:3116821/100‑1 (MQ=255)
                                                tctTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCAccc                                  <  2:1542352/98‑1 (MQ=255)
                                                tctTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTc                                >  1:211387/1‑100 (MQ=255)
                                                 ctTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCCCa                               >  2:302305/1‑100 (MQ=255)
                                                  ttattattaTATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAg                              <  1:1390409/100‑1 (MQ=255)
                                                  ttattattaTATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAg                              <  1:2215330/100‑1 (MQ=255)
                                                   tattattatATGTAACCTGGCCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGc                             >  2:2544944/1‑100 (MQ=255)
                                                    attattatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCa                            <  2:68528/100‑1 (MQ=255)
                                                    attattatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCa                            <  2:1680019/100‑1 (MQ=255)
                                                    attattatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCa                            <  1:3539622/100‑1 (MQ=255)
                                                    attattatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCa                            >  2:1056215/1‑100 (MQ=255)
                                                     ttattatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCAt                           >  1:3425870/1‑100 (MQ=255)
                                                      tattatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCAtg                          >  2:3365315/1‑100 (MQ=255)
                                                       attatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCAtgt                         >  1:577290/1‑100 (MQ=255)
                                                       attatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCAtgn                         <  1:156470/100‑2 (MQ=255)
                                                        ttatATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCAtgtg                        <  1:3157974/100‑1 (MQ=255)
                                                         tataTGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTgg                       <  2:3370516/100‑1 (MQ=255)
                                                          atatGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCAtgtg                        <  2:3726320/98‑1 (MQ=255)
                                                           tatGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGcc                     >  1:300434/1‑100 (MQ=255)
                                                            atGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGTCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCg                    <  1:908418/100‑1 (MQ=255)
                                                            atGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCg                    <  1:1561536/100‑1 (MQ=255)
                                                            atGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCg                    <  2:4169928/100‑1 (MQ=255)
                                                            atGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCg                    <  1:2533724/100‑1 (MQ=255)
                                                             tGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCgg                   >  1:3744087/1‑100 (MQ=255)
                                                             tGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCgg                   >  1:1791006/1‑100 (MQ=255)
                                                             tGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCgg                   >  2:3260664/1‑100 (MQ=255)
                                                              gTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGa                  <  1:165139/100‑1 (MQ=255)
                                                               tAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGAt                 <  1:3053372/100‑1 (MQ=255)
                                                                  ccTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAAc              <  2:211384/100‑1 (MQ=255)
                                                                    tGGGTATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCg            <  1:593741/100‑1 (MQ=255)
                                                                      ggCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTa          >  1:836153/1‑100 (MQ=40)
                                                                       gCATTGATATCCCGTATGCCATAGACACGGTAGGTAAGCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACACTCAGAATGTGGCCCGATAAcc             >  2:2223478/1‑96 (MQ=14)
                                                                        cATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATc        >  1:1288341/1‑100 (MQ=38)
                                                                        cATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCACCTACCCGACCCGGAGCTGCACCCGAACAACACCCTCAGCATGTAACCGGATAACCATa          >  2:1336971/1‑98 (MQ=11)
                                                                         aTTGAGATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCg       <  2:3940935/100‑1 (MQ=17)
                                                                          ttGATATCCCGTATGCAACAGACCCGGCAGGTAACCGCCTGCCCGAACCGGAGCTGCCACCGGACAGCACCCTAAGCATGTGGCCGGAGAACCGTAgcgc      >  2:1382366/1‑100 (MQ=11)
                                                                           tGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGcc     <  1:82905/100‑1 (MQ=33)
                                                                            gATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGccc    >  2:3438617/1‑100 (MQ=32)
                                                                              tatCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGt  <  1:1577531/100‑1 (MQ=11)
                                                                              tatCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGt  <  1:2511922/100‑1 (MQ=11)
                                                                                                   |                                                                              
GTTTGTATTAAGTAAGCGCATTATAAACAAATAAATTAAGTTAATTGCTCTTATTATTATATGTAACCTGGGCATTGATATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGT  >  NC_000913/734069‑734246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.