Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,242,942	Δ66 bp	coding (510‑575/891 nt)	malG ←	maltose transporter subunit

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4242942	4243007	66	64 [1]	[1] 64	malG	maltose transporter subunit

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4242941	1 (0.010)	53 (0.680)	40/184	1.5	98.2%	coding (576/891 nt)	malG	maltose transporter subunit
	?	NC_000913	4243008 =	1 (0.010)					coding (509/891 nt)	malG	maltose transporter subunit

ATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCCG  >  NC_000913/4242846‑4243040                                                                                                |                                                                                                    aTAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcc                                                                                                 <  1:1759684‑M1/100‑5 (MQ=255)    aaCGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccac                                                                                              <  1:1002574‑M1/100‑8 (MQ=255)      cGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccaccc                                                                                            >  2:106836‑M1/1‑91 (MQ=255)      cGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccaccc                                                                                            >  1:628361‑M1/1‑91 (MQ=255)      cGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGCACCAGGCGGAAGGCCTGCCACGATGCCGCACGATCCAGCGCAatccca                                                                                               >  2:110052‑M1/1‑91 (MQ=255)           ggATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagata                                                                                       >  2:789735‑M1/1‑86 (MQ=255)           ggATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagata                                                                                       >  2:418910‑M1/1‑86 (MQ=255)           ggATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagata                                                                                       >  1:1851896‑M1/1‑86 (MQ=255)           ggATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccag                                                                                          >  2:268991‑M1/1‑86 (MQ=255)            gATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatac                                                                                      <  1:1989617‑M1/100‑16 (MQ=255)             aTGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacg                                                                                     >  2:532492‑M1/1‑84 (MQ=255)               gAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcg                                                                                   <  2:1283526‑M1/100‑19 (MQ=255)                  tACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaa                                                                                >  2:309213‑M1/1‑79 (MQ=255)                    ccaccGCCAGAATCGGTACTGACAGCGGCAACAGGTCAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaat                                                                              >  1:341082‑M1/1‑77 (MQ=255)                    ccaccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaat                                                                              >  1:592788‑M1/1‑77 (MQ=255)                    ccaccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaat                                                                              <  1:495118‑M1/100‑24 (MQ=255)                    ccaccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaat                                                                              <  1:1607675‑M1/100‑24 (MQ=255)                    ccaccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaa                                                                               >  1:184166‑M1/1‑77 (MQ=255)                     caccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaatt                                                                             >  2:1621454‑M1/1‑76 (MQ=255)                     caccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaatt                                                                             <  2:1084666‑M1/100‑25 (MQ=255)                       ccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattac                                                                           <  1:2016472‑M1/100‑27 (MQ=255)                       ccGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattac                                                                           >  1:1356740‑M1/1‑74 (MQ=255)                                 cGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtga                                                                 >  2:1469716‑M1/1‑64 (MQ=255)                                   gTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagt                                                               >  1:547893‑M1/1‑62 (MQ=255)                                          cAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcagg                                                        <  2:307689‑M1/100‑46 (MQ=255)                                            gCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggcc                                                      <  2:869812‑M1/100‑48 (MQ=255)                                            gCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggcc                                                      >  1:1403147‑M1/1‑53 (MQ=255)                                             cGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggcca                                                     >  2:791733‑M1/1‑52 (MQ=255)                                             cGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggcca                                                     <  2:1115598‑M1/100‑49 (MQ=255)                                              ggCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaa                                                    <  1:789738‑M1/100‑50 (MQ=255)                                              ggCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATgg                                                    <  2:190895/100‑1 (MQ=255)                                                cAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatg                                                  <  1:160387‑M1/100‑52 (MQ=255)                                                cAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatg                                                  <  2:1635661‑M1/100‑52 (MQ=255)                                                cAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatg                                                  <  1:1186197‑M1/100‑52 (MQ=255)                                                    aGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCCatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatg                                              <  2:141369‑M1/100‑56 (MQ=255)                                                     ggACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatgg                                             >  1:1718414‑M1/1‑44 (MQ=255)                                                        cAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaat                                          <  2:1270426‑M1/100‑60 (MQ=255)                                                        cAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacccgaaaatcaccccgccacgagtattcagaccaatgaatggaa                                           >  2:678148‑M1/1‑41 (MQ=255)                                                          aGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgt                                        <  1:418911‑M1/100‑62 (MQ=255)                                                          aGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgt                                        <  1:1880594‑M1/100‑62 (MQ=255)                                                          aGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgt                                        >  1:987350‑M1/1‑39 (MQ=255)                                                          aGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgt                                        >  2:672408‑M1/1‑39 (MQ=255)                                                                aaGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcac                                  <  2:1282819‑M1/100‑68 (MQ=255)                                                                aaGGCCTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcac                                  <  2:1610368‑M1/100‑68 (MQ=255)                                                                     cTGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccaga                             >  1:341361‑M1/1‑28 (MQ=255)                                                                      tGCCACGGTGTCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagac                            >  2:1365647‑M1/1‑27 (MQ=255)                                                                             gtgtCGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaa                     <  2:987346‑M1/100‑81 (MQ=255)                                                                                 cGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaac                 <  1:672410‑M1/100‑85 (MQ=255)                                                                                 cGCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaac                 >  1:1108947‑M1/1‑16 (MQ=255)                                                                                  gCACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacg                <  2:1767058‑M1/100‑86 (MQ=255)                                                                                   cACCATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgc               <  2:1356731‑M1/100‑87 (MQ=255)                                                                                      cATCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgaccattcaggccaatgaatggaatgtactcacccagacgaacaaacaacgcata            >  2:6147‑M1/1‑11 (MQ=255)                                                                                       aTCCAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatac           >  2:953650‑M1/1‑10 (MQ=255)                                                                                        tCCAGCGCAaacccacacagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcataca          <  1:602971‑M1/100‑92 (MQ=255)                                                                                          cAGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaac        >  2:1888056‑M1/1‑7 (MQ=255)                                                                                           aGCGCAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacg       <  2:547891‑M1/100‑95 (MQ=255)                                                                                            gcgcAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgc      >  1:1023714‑M1/1‑5 (MQ=255)                                                                                              gcAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcga    >  1:1581451‑M1/1‑3 (MQ=255)                                                                                              gcAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcga    >  1:1581447‑M1/1‑3 (MQ=255)                                                                                               cAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcgac   <  2:341081‑M1/100‑99 (MQ=255)                                                                                               cAatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcgac   <  1:791736‑M1/100‑99 (MQ=255)                                                                                                aatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcgacc  <  2:592786‑M1/100‑100 (MQ=255)                                                                                                aatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcgacc  <  1:1409717‑M1/100‑100 (MQ=255)                                                                                                aatcccacccagatacgcgaaaattacgccgccgtgagtattcaggccaatgaatggaatgtactcacccagacgatcaaacaacgcatacaacgcgacc  <  2:184165‑M1/100‑100 (MQ=255)                                                                                                |                                                                                                    ATAAACGACAGGATGAATACCACCGCCAGAATCGGTACTGACAGCGGCAACAGGACAAGGCGGAAGGCCTGCCACGGTGTCGCACCATCCAGCGCAGCAGCTTCTTCCAGCGAACTGTCGATGGTTTCGAAATAGCCTTTGATGGTCCAGACATGCAGCGCAATCCCACCCAGATACGCGAAAATTACGCCGCCG  >  NC_000913/4242846‑4243040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑