New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1190580 =	NA (NA)	7 (0.050)	5/166	NT	NA	noncoding (1/23 nt)	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1190603 =	NA (NA)					intergenic (‑156/+13)	phoP/purB	response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase

CGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1190684‑1190580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  >  NC_000913/1190603‑1190701                                                                                                                                                                                                              CGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGT                                                                                                          <  2:207410/100‑1  GCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTC                                                                                                         <  1:782884/100‑1  GCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTC                                                                                                         >  2:1001964/1‑100   CCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCC                                                                                                        >  2:3159342/1‑100     TGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGG                                                                                                      >  2:892808/1‑100      GAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC                                                                                                     >  2:496178/1‑100      GAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC                                                                                                     >  1:2903253/1‑100                                                            GCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATAT                                               >  1:1401601/1‑100                                                            GCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATAT                                               >  1:256047/1‑100                                                                               CAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGC                            >  1:1209268/1‑100                                                                                AGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCT                           >  1:1031181/1‑100                                                                                  TGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTT                         >  2:3253165/1‑100                                                                                   GCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTC                        >  2:1316750/1‑100                                                                                   GCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTC                        >  2:2327867/1‑100                                                                                                     CCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCT      >  1:347096/1‑100                                                                                                      CGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTT     >  1:510643/1‑100                                                                                                      CGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTT     >  2:2257517/1‑100                                                                                                      CGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTT     >  1:2342568/1‑100                                                                                                       GGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTC    <  2:1504794/100‑1                                                                                                        GCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTTATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCT   <  2:3567046/100‑1                                                                                                        GCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCT   <  2:570656/100‑1                                                                                                         CACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  <  2:1461761/100‑1                                                                                                         CACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  >  2:2328810/1‑100                                                                                                         CACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  >  2:3634203/1‑100                                                                                                                                                                                                              CGCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1190684‑1190580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  >  NC_000913/1190603‑1190701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.