New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1190580 =NA (NA)7 (0.050) 5/166 NT NA noncoding (1/23 nt) REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 1190603 = NA (NA)intergenic (‑156/+13) phoP/purB response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase

Only 100 of 184 total aligned reads displayed.

TGTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTC  >  NC_000913/1190481‑1190679
                                                                                                   |                                                                                                   
tgtAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAgg                                                                                                     >  2:4140762/1‑100 (MQ=255)
tgtAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAgg                                                                                                     >  2:28168/1‑100 (MQ=255)
cagaagaagagaaagcccgcctgaaagcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtg                                                                                                     >  2:3634203‑M1/100‑100 (MQ=255)
 gtAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGc                                                                                                    <  1:3114774/100‑1 (MQ=255)
 gtAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGc                                                                                                    >  2:235996/1‑100 (MQ=255)
 gtAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGc                                                                                                    >  2:2429822/1‑100 (MQ=255)
 gtAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGc                                                                                                    >  2:3619501/1‑100 (MQ=255)
  tAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGcc                                                                                                   <  1:2527986/100‑1 (MQ=255)
   aagaagagaaagcccgcctgaaagcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCg                                                                                                  >  2:2257517‑M1/97‑100 (MQ=255)
   aagaagagaaagcccgcctgaaagcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCg                                                                                                  >  1:2342568‑M1/97‑100 (MQ=255)
    agaagagaaagcccgcctgaaagcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCgg                                                                                                 >  1:347096‑M1/96‑100 (MQ=255)
          ttATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCa                                                                                           <  2:1808652/100‑1 (MQ=255)
            aTGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATc                                                                                         >  1:917601/1‑100 (MQ=255)
            aTGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATc                                                                                         <  2:3456109/100‑1 (MQ=255)
             tgtgGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCg                                                                                        <  2:45018/100‑1 (MQ=255)
              gtgGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGc                                                                                       >  1:644827/1‑100 (MQ=255)
                 gTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCAt                                                                                    >  2:1621410/1‑100 (MQ=255)
                   tATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATcc                                                                                  >  1:582890/1‑100 (MQ=255)
                     tGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCgg                                                                                >  2:1874040/1‑100 (MQ=255)
                     tGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGGAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATcc                                                                                  >  1:352669/1‑98 (MQ=255)
                      gggggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGc                                                                               <  2:2351581/100‑1 (MQ=255)
                      gaaagcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCGGACAGCATCGCCATCCGGc                                                                               >  2:2327867‑M1/78‑100 (MQ=255)
                       ggggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATCATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCa                                                                              >  2:286974/1‑100 (MQ=255)
                       ggggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCa                                                                              <  2:3571489/100‑1 (MQ=255)
                       aaagcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCGGACAGCATCGCCATCCGGCa                                                                              >  2:3253165‑M1/77‑100 (MQ=255)
                        gggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCAc                                                                             <  2:681754/100‑1 (MQ=255)
                         ggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACt                                                                            <  2:4129004/100‑1 (MQ=255)
                         ggTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACt                                                                            >  1:3159330/1‑100 (MQ=255)
                         agcgatgacgccggctaactatattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCGGACAGCATCGCCATCCGGCACt                                                                            >  1:1031181‑M1/75‑100 (MQ=255)
                           tAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGa                                                                          >  1:3056317/1‑100 (MQ=255)
                             aaCATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATa                                                                        <  2:1023417/100‑1 (MQ=255)
                              aCATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATAc                                                                       <  2:3800484/100‑1 (MQ=255)
                               cATTAAATAAACCGGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACg                                                                      >  2:2905817/1‑100 (MQ=255)
                                aTTAAATAAACCAGCGGGGAGGGGAGGAAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGa                                                                     <  2:2546157/100‑1 (MQ=255)
                                 ttAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAg                                                                    >  1:2461191/1‑100 (MQ=255)
                                 ttAAATAAACCACCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAg                                                                    <  1:3283790/100‑1 (MQ=255)
                                  taaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAgg                                                                   <  2:977340/100‑1 (MQ=255)
                                  taaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAgg                                                                   >  1:1218981/1‑100 (MQ=255)
                                   aaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGt                                                                  <  1:1437421/100‑1 (MQ=255)
                                   aaataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGt                                                                  >  1:840779/1‑100 (MQ=255)
                                     ataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGttt                                                                <  1:28168/100‑1 (MQ=255)
                                     ataaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGttt                                                                <  2:1317485/100‑1 (MQ=255)
                                      taaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTa                                                               >  1:2190161/1‑100 (MQ=255)
                                       aaaCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTAt                                                              >  1:3616221/1‑100 (MQ=255)
                                        aaCCAGCGGGGAAGGGAGGTAAAGCGAAAAAATAACAGGCGGATAATCACACTAAGCAGGCCGGACAGCATCGCCACCCGGCACTGATACGAgg                                                                   >  1:2645731/1‑94 (MQ=255)
                                         aCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTAttt                                                            >  1:392216/1‑100 (MQ=255)
                                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                           <  2:392218/100‑1 (MQ=255)
                                          ccAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTc                                                           >  2:3989491/1‑100 (MQ=255)
                                           ttccgatctggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCa                                                          <  1:1962798/91‑1 (MQ=255)
                                            aGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAg                                                         >  2:1227808/1‑100 (MQ=255)
                                             gCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGc                                                        <  2:488735/100‑1 (MQ=255)
                                             gCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGc                                                        >  1:2845621/1‑100 (MQ=255)
                                             atattggtcgagctatcacgatggttgatgagctgaaataaacctcgtatcagtGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGc                                                        >  1:1401601‑M1/55‑100 (MQ=255)
                                              cGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCt                                                       >  2:2871643/1‑100 (MQ=255)
                                                gggaggggagGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGc                                                        <  1:609742/97‑1 (MQ=255)
                                                gggaggggagGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCtca                                                     >  1:2957425/1‑100 (MQ=255)
                                                   aggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCtcatca                                                  <  2:760186/100‑1 (MQ=255)
                                                    ggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCaagatcggaa                                                 >  2:1962802/1‑91 (MQ=255)
                                                    ggggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCaa                                                 >  2:3346561/1‑100 (MQ=255)
                                                     gggaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCt                                                       <  1:1105302/93‑1 (MQ=255)
                                                       gaggTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCa                                              >  1:68632/1‑100 (MQ=255)
                                                          gTAAAGTGAAAAAATAAAAAGCCGATAACCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCACCg                                           <  1:3170899/100‑1 (MQ=255)
                                                           tAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGt                                          <  2:2345085/100‑1 (MQ=255)
                                                           tAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGt                                          >  2:845338/1‑100 (MQ=255)
                                                           tAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGt                                          >  2:3943807/1‑100 (MQ=255)
                                                               gTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGAt                                       >  1:4089461/1‑99 (MQ=255)
                                                               gTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATa                                      <  2:4092515/100‑1 (MQ=255)
                                                               gTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATa                                      <  1:3319751/100‑1 (MQ=255)
                                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                    >  2:1488291/1‑100 (MQ=255)
                                                                 gAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATAGCCATCCGGCACTGATACGAGGTTTATTTCAGGTCATCAGCCATCGTg                                         >  1:3478831/1‑95 (MQ=255)
                                                                  aaaaaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGc                                    >  1:2112749/1‑99 (MQ=255)
                                                                  aaaaaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCt                                   <  1:1498576/100‑1 (MQ=255)
                                                                    aaaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGTTTTATTTCAGCTCATCAACCATCGTGATAGCTCg                                 <  1:2789775/100‑1 (MQ=255)
                                                                    aaaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCg                                 <  1:3238754/100‑1 (MQ=255)
                                                                    aaaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCg                                 >  2:3919467/1‑100 (MQ=255)
                                                                     aaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGa                                >  2:509214/1‑100 (MQ=255)
                                                                     aaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGa                                <  2:1517605/100‑1 (MQ=255)
                                                                     aaaTAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGa                                >  2:1162908/1‑100 (MQ=255)
                                                                          aaaaGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAat                           >  2:2975822/1‑100 (MQ=255)
                                                                            aaGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAatat                         >  2:1176970/1‑100 (MQ=255)
                                                                            aaGCGAATACTCTGAATATGCGGGCCGGACAGCATCGCCATTCGGTAATGATACGAGGTTTATTTCAGCTCATCAACCCTCGTGATAGCTCGACCActa                          <  1:4210721/99‑1 (MQ=255)
                                                                              gCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAg                       <  2:678177/100‑1 (MQ=255)
                                                                                 gATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTa                    >  1:633894/1‑100 (MQ=255)
                                                                                  aTAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAg                   <  1:3413583/100‑1 (MQ=255)
                                                                                     aTCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCg                >  2:4026875/1‑100 (MQ=255)
                                                                                     aTCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCg                >  2:947049/1‑100 (MQ=255)
                                                                                     aTCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCg                >  1:496176/1‑100 (MQ=255)
                                                                                        ttAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCg             <  2:3429766/100‑1 (MQ=255)
                                                                                        ttAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCg             >  1:1159076/1‑100 (MQ=255)
                                                                                           ataaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCa          >  2:822575/1‑100 (MQ=255)
                                                                                            taaGCAGGCCGGACATCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCa          <  1:2068916/99‑1 (MQ=255)
                                                                                            taaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCAt         >  1:1001961/1‑100 (MQ=255)
                                                                                            taaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCAt         >  1:1461757/1‑100 (MQ=255)
                                                                                            taaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCAt         >  1:3705018/1‑100 (MQ=255)
                                                                                             aaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATc        <  2:582892/100‑1 (MQ=255)
                                                                                             aaGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATc        <  2:3378379/100‑1 (MQ=255)
                                                                                               gcgggCTGGACAGCGTCGCCAGCCGGCAGTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGt            <  1:2194356/91‑1 (MQ=255)
                                                                                                 aGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCtt    >  2:2075962/1‑100 (MQ=255)
                                                                                                  ggCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCtt    >  1:526198/1‑99 (MQ=255)
                                                                                                   GCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTc  >  1:2903253‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TGTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGACAGCATCGCCATCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTC  >  NC_000913/1190481‑1190679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.