| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2538535 = | NA (NA) | 13 (0.100) | 8/164 | NT | NA | noncoding (1/98 nt) | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3234693 | NA (NA) | noncoding (56/86 nt) | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2538639‑2538535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTCCATAAAACAAAAA < NC_000913/3234693‑3234595 CAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCAT > 2:1297102/1‑100CAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCAT > 1:3902868/1‑100 AAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCC < 1:953251/100‑1 ACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGG < 1:593737/100‑1 ACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGG < 1:1484944/100‑1 CTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGC < 2:3380051/100‑1 TGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCC < 2:3516180/100‑1 TGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCC < 1:2440436/100‑1 CTGATGCGCTACGCGTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC < 2:1278931/96‑1 GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCC > 2:3391514/1‑100 AGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCACTGTCTGCCCA > 2:231374/1‑100 AGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCA > 1:279998/1‑100 GGCCGGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAG > 1:2458563/1‑100 CCGGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTT > 1:1100899/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGTAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCT > 1:924781/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCT > 1:3248897/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCT > 2:2599342/1‑100 GGATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCT > 1:966736/1‑100 GGATAAGGCGTTTAAGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGCTCT > 2:1204937/1‑100 GATAAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTG > 1:572733/1‑100 AAGGCGTTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAA < 1:3391534/100‑1 TTTACGCCGCATCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGC > 1:3957947/1‑100 ttagCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCGAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTC < 2:977391/91‑1 TCCGGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTCCATAAAAC < 2:3916024/100‑1 GGCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTCCATAAAACAAA > 2:3213232/1‑100 GCCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTCCATAAAACAAA < 2:551270/99‑1 CCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTCCATAAAACAAAAA < 1:2949311/100‑1 CAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCACGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2538639‑2538535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGTTCAGCACGTTACTCCAGGCCGGATAAGACGCGGCAAGCGTCGCATCCGGCAATGTCTGCCCAGTTCTGGAATCGCGCTTCCATAAAACAAAAA < NC_000913/3234693‑3234595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |