BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2538535 =	NA (NA)	13 (0.100)	8/164	NT	NA	noncoding (1/98 nt)	RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	= 3234693	NA (NA)	13 (0.100)	8/164	NT	NA	noncoding (56/86 nt)	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 167 total aligned reads displayed.

TTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGT  >  NC_000913/3234595‑3234792

tttttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGg                                                                                                    <  1:2949311‑M2/100‑2 (MQ=255)

  tttGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgcc                                                                                                  >  2:3213232‑M2/1‑97 (MQ=255)

       tttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATa                                                                                             <  2:711587/100‑1 (MQ=255)

          aTGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAgg                                                                                          <  1:3359122/100‑1 (MQ=255)

           tGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGc                                                                                         >  2:2316214/1‑100 (MQ=255)

           tGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGc                                                                                         >  2:1239475/1‑100 (MQ=255)

           tGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGc                                                                                         <  1:1336236/100‑1 (MQ=255)

             gAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTCGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggctaa                                                                                            <  2:977391‑M2/95‑10 (MQ=255)

               aGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGttt                                                                                     <  1:1000940/100‑1 (MQ=255)

                gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaa                                                                                    >  1:3957947‑M2/1‑83 (MQ=255)

                   cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc                                                                                 >  2:781461/1‑100 (MQ=255)

                   cgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgc                                                                                 <  1:4003643/100‑1 (MQ=255)

                    gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  2:1713936/100‑1 (MQ=255)

                    gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgcc                                                                                <  2:521835/100‑1 (MQ=255)

                     aTTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccg                                                                               <  2:44621/100‑1 (MQ=255)

                     aTTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGACTGGAGTCAAGTGCTGAACGTAGGCCGGCTACGTCGTTTAcgcc                                                                                >  2:3759108/1‑99 (MQ=37)

                     aTTCCAGAACTGGGCAGACATTGCCGGATGAGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccg                                                                               <  2:2654648/100‑1 (MQ=255)

                      ttCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              <  1:1062039/100‑1 (MQ=255)

                       tCCAGAAGTGGGCAGACATTGCCGGAGGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCGGAACGTAGGCCGGATAAGGCGTTTAcgccgc                                                                              <  2:382001/99‑1 (MQ=255)

                        ccAGAACTGGTCAGACATTGCCGGGTGCGACGCTTGCCGCGTCTTATCATGCCTGGAGTCACGTCCTGAACCTAGACCGGATAAGGTGCTTACGCCGCAt                                                                            >  2:1759116/1‑100 (MQ=25)

                        ccAGAACTGGGCAGACATTGCCGGATGCGCCGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTAcggcg                                                                               >  1:1878455/1‑97 (MQ=255)

                         cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatc                                                                           >  1:572733‑M2/1‑74 (MQ=255)

                         cAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                           <  2:2280029/100‑1 (MQ=255)

                          aGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatcc                                                                          >  1:966736‑M2/1‑73 (MQ=255)

                          aGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                                          <  1:1247401/100‑1 (MQ=255)

                          aGAACTGGGCAGACATTGCCGGATGCGACGCTTACCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatcc                                                                          >  1:924781‑M2/1‑73 (MQ=255)

                           gAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCg                                                                         <  2:1106356/100‑1 (MQ=255)

                            aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                        >  2:2245925/1‑100 (MQ=255)

                             aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  1:3070102/100‑1 (MQ=255)

                             aCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  2:556213/100‑1 (MQ=255)

                              cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatccggcc                                                                      >  1:2458563‑M2/1‑69 (MQ=255)

                              cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                       <  1:1957663/99‑1 (MQ=255)

                              cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      <  2:3519167/100‑1 (MQ=255)

                              cTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                      <  2:2284509/100‑1 (MQ=255)

                               tGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAg                                                                     <  2:4092183/100‑1 (MQ=255)

                                 ggCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGgccggatgcggcgtaaacgccttatccggcctac                                                                   >  2:3391514‑M2/1‑66 (MQ=255)

                                  gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa                                                                  <  2:494010/100‑1 (MQ=255)

                                  gCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTa                                                                  <  1:3545894/100‑1 (MQ=255)

                                    aGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAAc                                                                <  1:2085934/100‑1 (MQ=255)

                                     gACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACt                                                               >  1:1183055/1‑100 (MQ=255)

                                        aTTGCCGGATGCGACGCTTGCCGCGTCTTTTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTccc                                                            <  1:3571996/100‑1 (MQ=255)

                                        aTTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAAAGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTccc                                                            <  1:1220083/100‑1 (MQ=255)

                                           gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                         >  2:1303643/1‑100 (MQ=255)

                                           gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                         <  1:2631091/100‑1 (MQ=255)

                                           gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                         <  1:1615501/100‑1 (MQ=255)

                                              ggATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCtt                                                      <  2:2368863/100‑1 (MQ=255)

                                               gATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTa                                                     <  2:2012936/100‑1 (MQ=255)

                                               gATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTa                                                     <  2:1986065/100‑1 (MQ=255)

                                                aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc                                                    <  2:3140876/100‑1 (MQ=255)

                                                aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc                                                    <  1:3395143/100‑1 (MQ=255)

                                                aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc                                                    <  2:1838202/100‑1 (MQ=255)

                                                aTGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAc                                                    <  1:2695538/100‑1 (MQ=255)

                                                 tGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTAcc                                                   <  1:896696/100‑1 (MQ=255)

                                                   caaCGCTTGCCGCGTCTTATCCGGCCTGGGTTAGCGTGCTGCACGTAGGCCTGATAAGGCGATTACGACGCATCCGGCAGGTAACTCCCAGTCtt                                                      >  2:2619959/3‑95 (MQ=25)

                                                   cGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTGACTCCCAATCTTACcga                                                 >  1:2753635/1‑100 (MQ=255)

                                                   cGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                 <  1:3696312/100‑1 (MQ=255)

                                                     aCGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg                                               <  1:1714918/100‑1 (MQ=255)

                                                     aCGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcgacg                                               <  1:2141494/100‑1 (MQ=255)

                                                       gattGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGCTAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCgacgac                                             >  1:2790569/3‑100 (MQ=255)

                                                         ttGCCGCGTTTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGacgacg                                            <  2:1815749/99‑1 (MQ=255)

                                                            ccGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTccc                                        <  1:2364392/100‑1 (MQ=255)

                                                                 tCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCtt                                   >  2:3020801/1‑100 (MQ=255)

                                                                   ttATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCa                                 <  1:4060911/100‑1 (MQ=255)

                                                                    tATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAc                                >  2:2101315/1‑100 (MQ=255)

                                                                    tATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAc                                <  1:3662337/100‑1 (MQ=255)

                                                                    tATCAGGCCTGGAGTAAAGTCCGGCACGTAGGCCGGATAAGGCGTTCAAGCCGCATAAGGAAGGTAACTCCACATCTTCCCGACGACATCCAAGCATc                                  >  2:2889872/1‑98 (MQ=12)

                                                                     aTCCGGCCTGGAGTAACGTGCTGTACGTAGGCCGACTACGTCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCa                                 >  2:907572/1‑98 (MQ=38)

                                                                     aTCCGGCCTGGAGTAACGTGCTGCACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCACAAGCTTACCGACGACGTCCCAGCtgc                                  >  2:2206735/1‑95 (MQ=37)

                                                                     aTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGCTAAAGCGTTAACGCCGCATCCGGCAGCTAACACCCAAGCTTACCGACGACGTCCCAGCTTCAc                                >  2:1425781/1‑99 (MQ=37)

                                                                     aTCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAcc                               <  1:2240924/100‑1 (MQ=255)

                                                                      tCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCg                              <  1:1001763/100‑1 (MQ=255)

                                                                      tCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCg                              <  2:2465668/100‑1 (MQ=255)

                                                                           ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc                         <  2:3852009/100‑1 (MQ=255)

                                                                            cTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc                         <  2:2770530/99‑1 (MQ=255)

                                                                            cTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTc                         >  2:111574/1‑99 (MQ=255)

                                                                            cTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCa                        <  2:3364529/100‑1 (MQ=255)

                                                                             tGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCa                        <  2:3699897/99‑1 (MQ=255)

                                                                             tGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAg                       <  2:2657410/100‑1 (MQ=255)

                                                                             tGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAg                       <  2:3309680/100‑1 (MQ=255)

                                                                              ggAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCCGt                      >  2:2947708/1‑100 (MQ=255)

                                                                              ggAGTAACGAGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAg                       >  2:1658265/1‑99 (MQ=255)

                                                                                aGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTAc                    <  1:3434932/100‑1 (MQ=255)

                                                                                 gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTAcc                   <  1:1682787/100‑1 (MQ=255)

                                                                                 gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTAcc                   <  2:1189490/100‑1 (MQ=255)

                                                                                 gTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTAcc                   <  2:3842746/100‑1 (MQ=255)

                                                                                   aaCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACcac                 <  1:1509610/100‑1 (MQ=255)

                                                                                   aaCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACcac                 <  2:160254/100‑1 (MQ=255)

                                                                                    aCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACcaca                <  1:3502430/100‑1 (MQ=255)

                                                                                     cGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACaa               >  2:3567186/1‑100 (MQ=255)

                                                                                        gCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAAtt            >  2:389384/1‑100 (MQ=255)

                                                                                         cTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACTACGTCCCAGCTTCACCGCTTTCAGTACCACAAAttt           <  1:2910622/100‑1 (MQ=255)

                                                                                          tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATtta          >  2:1605864/1‑100 (MQ=255)

                                                                                          tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATtta          >  1:2570142/1‑100 (MQ=255)

                                                                                          tGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATtta          >  2:1951799/1‑100 (MQ=255)

                                                                                           gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACTTCCCAGCTTCACCGCTTTCAGGACCACAAATttat         >  2:2254135/1‑100 (MQ=255)

                                                                                           gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttat         <  1:3540817/100‑1 (MQ=255)

                                                                                            aaCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatt        <  2:3495999/100‑1 (MQ=255)

                                                                                            aaCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatt        >  2:1686292/1‑100 (MQ=255)

                                                                                                  ggccggataaggcgtttacgccgcatccggcctacaaaatcgtgctaattcaatatattgcagaaaccttgtaggcctgataagcgtagcgcatcaggca  <  2:3516180‑M2/100‑100 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATtcgt  >  2:4085004/1‑100 (MQ=255)

TTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGT  >  NC_000913/3234595‑3234792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.