New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1465092 =	107 (0.720)	15 (0.120)	11/156	NT	15.0%	intergenic (+31/+73)	paaY/ynbG	thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
	?	NC_000913	1465125 =	76 (0.590)					intergenic (+64/+40)	paaY/ynbG	thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein

AAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1465201‑1465092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctgctttatTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATA  >  NC_000913/1465125‑1465222                                                                                                                                                                                                                  AAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAAC                                                                                                              <  2:2323217/100‑1   ATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTC                                                                                                            >  2:1645288/1‑100   ATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTC                                                                                                            >  1:219197/1‑100   ATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTC                                                                                                            >  1:2875027/1‑100       CAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCT                                                                                                        <  1:1841922/100‑1       CAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCT                                                                                                        >  1:1849432/1‑100       CAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGC                                                                                                         >  1:1532500/1‑99        tccgatctACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTT                                                                                                       <  1:9184/92‑1        AAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTT                                                                                                       <  2:1963293/100‑1        AAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTT                                                                                                       <  1:749667/100‑1         AATTAAAACCTCATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTT                                                                                                      >  2:1586513/1‑100           TTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT                                                                                                    >  1:630114/1‑100                ACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTagatcgga                                                                                               >  2:9184/1‑92                                               GAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCAT                                                                >  1:1598732/1‑100                                                       GGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTAT                                                        >  2:92353/1‑100                                                             AATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAA                                                  >  1:736864/1‑100                                                                     CTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATG                                          >  1:1762868/1‑100                                                                       CAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTG                                        >  1:1730501/1‑100                                                                        AAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATATTATAATTATTTATAATGAGAATtt                                         >  2:1142975/1‑96                                                                         AATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGT                                      >  2:1439584/1‑100                                                                         AATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGT                                      >  2:3625717/1‑100                                                                         AATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGT                                      >  1:2441714/1‑100                                                                         AATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGT                                      >  1:961596/1‑100                                                                         AATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATAATATAATTATTTATAATGAGAATGTGGT                                      >  2:1930818/1‑100                                                                           TAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGATAATGTGTTTT                                    >  2:3860737/1‑100                                                                               TAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAAT                                >  1:3347371/1‑100                                                                                 AAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTT                              >  2:3938838/1‑100                                                                                  AGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTG                             >  1:2186048/1‑100                                                                                                    CTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACA           <  1:1185062/100‑1                                                                                                    CTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACA           >  1:158890/1‑100                                                                                                        GCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAAT       >  1:3726604/1‑100                                                                                                        GCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAACGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAAT       >  2:2493528/1‑100                                                                                                        GCTTTATTTATTTGAGTATAAATTCATCCCGATTTTTCATCATATAATTATTTATAATGAGAATGTGATTTTAATTTGTAATTTATATTATATACA           >  2:1166513/1‑96                                                                                                          TTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTT     >  1:3462432/1‑100                                                                                                          TTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTT     <  1:492770/100‑1                                                                                                          TTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTT     <  1:3545186/100‑1                                                                                                           TTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTA    <  2:2264570/100‑1                                                                                                           TTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTA    <  1:3142714/100‑1                                                                                                           TTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTA    <  1:3831544/100‑1                                                                                                            TATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGTTTTTAATTTGTAATTTATATTACATACACAATTTAT   >  2:735208/1‑100                                                                                                             ATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATA  >  1:2910676/1‑100                                                                                                             ATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATA  >  2:2816329/1‑100                                                                                                             ATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATA  <  1:1181080/100‑1                                                                                                                                                                                                                  AAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1465201‑1465092 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctgctttatTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATA  >  NC_000913/1465125‑1465222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.