| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3898636 | NA (NA) | 10 (0.080) | 6/162 | NT | NA | noncoding (6/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3898650 | NA (NA) | noncoding (20/26 nt) | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP282 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3898530‑3898636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATA < NC_000913/3898650‑3898553 AAACGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACA < 2:962303/100‑1 AAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGG < 1:3427220/100‑1 AAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGG < 1:2741885/100‑1 nGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGC > 1:1578118/2‑100 GGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCC < 1:396269/100‑1 GGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCC < 1:2327102/100‑1 GGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCC < 1:3410934/100‑1 tGTGGTCCTTGTCAGGGTTATATCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAG > 2:599339/2‑96 GGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCG > 1:1027526/1‑100 GTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAACTGAGACTGAGGGGTGATTATTCGTAGTTATTTAAATAATGAGAACAG > 1:1587906/1‑95 CATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTG < 2:1900991/100‑1 CTTCCGCTGTCTCCACTGCGGCAAGCTGGGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCGCCGGCC < 2:2305133/100‑1 CTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCC < 2:2582267/100‑1 TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGTGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG < 1:1463091/100‑1 TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG < 1:3002319/100‑1 TCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTG < 1:1655770/100‑1 CCGCTGTCTCCACTGCGGCAAGTTGAGACTGTGGTGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGT < 1:1688861/100‑1 CTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCT < 1:264812/100‑1 TGTCTCCACTGCGTCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCATATGTGTGAATTACGCTCCTGCCTGTCCTC < 2:1639790/100‑1 TGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTC < 1:2664382/100‑1 CTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATT < 2:301153/100‑1 GGCCGGATGTGTGAATTACTTTTTGGTTTGTTTTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG < 1:1078701/100‑1 GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG > 1:60867/1‑100 GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAG < 2:154545/100‑1 GGCCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAA > 2:829985/1‑99 CCGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAG < 1:1073547/100‑1 CGGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGA < 2:2464604/98‑1 GGATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGAT < 1:1476605/100‑1 GATGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATA > 1:2255042/1‑100 AAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3898530‑3898636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccggaTGTGTGAATTACGCTCCGGCCTGTTCTCATTATTTAAATAACTACGAAAAATCACCCCACAGTCTCAGCTTGCCGCAGTGGAGACAGCGGAAGAGATA < NC_000913/3898650‑3898553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |