New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	50327 =	NA (NA)	10 (0.080)	5/164	NT	NA	noncoding (1/37 nt)	REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	50360 =	NA (NA)					noncoding (34/37 nt)	REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGTCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/50431‑50327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCAG  >  NC_000913/50360‑50457                                                                                                                                                                                                             TGTCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCAT                                                                                                         <  1:3267335/100‑1   TCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCC                                                                                                       >  2:3100287/1‑100   TCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCC                                                                                                       <  2:2967266/100‑1   TCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCC                                                                                                       >  2:2431340/1‑100    CCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCG                                                                                                      >  1:522110/1‑100        CCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCGGag                                                                                                   >  2:1410552/1‑97                                   GAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACACGACCGGCGTCTTATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGC                                                                       >  2:2202725/1‑100                                                                        GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGC                                  >  2:3856808/1‑100                                                                        GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGC                                  >  1:252955/1‑100                                                                        GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGC                                  >  1:3763383/1‑100                                                                        GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCACCACTTCGCCAAAATCCTTATTCCGGTGCGACGGC                                  >  1:1744145/1‑100                                                                        GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCAGACGCTTCGACCAAATCCTTATACCAGTTag                                       >  1:161231/1‑93                                                                        GGCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGACGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGC                                  >  1:3497934/1‑100                                                                         GCCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCT                                 >  1:858863/1‑100                                                                          CCGGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTG                                >  1:1584364/1‑100                                                                            GGATAAGACGCGACCGGCGTCGCATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGA                              >  2:2984579/1‑100                                                                                                  nATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCCTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCA        >  2:2497517/2‑100                                                                                                   ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCagat       >  2:3259213/1‑96                                                                                                   ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG       <  1:3569080/100‑1                                                                                                   ATCCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAG       >  2:513018/1‑100                                                                                                     CCGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCG     >  1:2230143/1‑100                                                                                                      CGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGTCGGTTCGACGGCTGGACAAAATACTATTTATCTTCCCAGCGC    >  1:671953/1‑100                                                                                                      CGGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGC    >  1:37570/1‑100                                                                                                       GGCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGATTCAACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCA   >  1:1155356/1‑100                                                                                                        GCCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCAG  <  1:449933/100‑1                                                                                                                                                                                                             TGTCCAGCCGTCGAACCGGCATAAGGATTTGGGCGAAGCGGCGGCGTCTTAAACACAGCCTGATATAGGAAGGCCGGATAAGACGCGACCGGCGTCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/50431‑50327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTTCCTATATCAGGCTGTGTTTAAGACGCCGCCGCTTCGCCCAAATCCTTATGCCGGTTCGACGGCTGGACAAAATACTGTTTATCTTCCCAGCGCAG  >  NC_000913/50360‑50457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.