New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	805804 =	NA (NA)	14 (0.110)	6/164	NT	NA	noncoding (1/178 nt)	REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	805836 =	NA (NA)					noncoding (33/178 nt)	REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences

CATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/805909‑805804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAA  >  NC_000913/805836‑805934                                                                                                                                                                                                               CATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCA                                                                                                           <  1:3365454/100‑1  ATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCAT                                                                                                          >  2:847305/1‑100  ATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCAT                                                                                                          >  2:468987/1‑100   TCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATC                                                                                                         <  2:1479706/100‑1    CGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCC                                                                                                        <  1:618922/100‑1     gaattCGACAATAATTGCTGGATGGTGCGAAAATGCCTTATTTGGCCTAAAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCC                                                                                                        <  1:2438511/94‑1     GCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATTTGGTCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCC                                                                                                        <  1:1171262/99‑1     GCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCG                                                                                                       <  2:3679605/100‑1     GCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCG                                                                                                       <  2:3609409/100‑1      CATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATGCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCG                                                                                                       <  1:3152512/99‑1       ATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC                                                                                                     <  2:1189060/100‑1       ATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC                                                                                                     <  2:975675/100‑1       ATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC                                                                                                     <  2:2013467/100‑1       ATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC                                                                                                     <  1:3048535/100‑1        tccgtgAATAAGTGCCGGATGCTGGGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC                                                                                                     <  2:1703746/93‑1                                                                      CGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCTAATCTGTAGGCCAAATAAAACATTTTCGCAGCATCCCGCACTTATT                                        >  1:703027/1‑98                                                                         AGGTCGGATAAGATGCGCAATCATCGTATCCGACCTACGAATCGCATCGAATCTGTATGCCAGATAAGGCTTTTTCGCAGCATCCGGCACTTATTTTCGG                                   >  2:174024/1‑100                                                                           GTCGGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGAT                                 >  1:1979251/1‑100                                                                           GTCGGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGACAAATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGAT                                 >  1:36731/1‑100                                                                           GTCGGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATATGTAAAAAAGATAAGGCATATTCACAGCATCCGGCACTTATTGTCGGA                                  >  1:1009688/1‑99                                                                             CGGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGC                               >  1:1025110/1‑100                                                                             CGGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCACAGCATCCGGCACTTATTGTCGGATac                               >  1:1815510/1‑98                                                                              GGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCG                              >  2:3228069/1‑100                                                                              GGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAAGCATTTTCGCAGCATCCGGCACTTATTGACGGAT                                 >  2:2631123/1‑97                                                                              GGATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGAAAAAGCATTTTCGCAGCATCCGGCACTTATTGTCGGATG                                >  1:445379/1‑98                                                                              GGATAAGATGCGCAAGCATCGCATCCGACCTACGAATAGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCG                              >  2:2095676/1‑100                                                                              GGATAAGATGCGCAAGCATCGCATCAGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCCGACCTTATTGTCGGATGC                               >  2:3404204/1‑99                                                                               GATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGA                             >  1:3074608/1‑100                                                                               GATAAGATGCGCAAGCATCGCATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGA                             >  1:2200042/1‑100                                                                                                    cTCCGACCTACGAATCGCATCGAATGTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGA         <  2:3326250/98‑1                                                                                                    ATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGAC        >  2:563/1‑100                                                                                                    ATCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGA         >  1:3060090/1‑99                                                                                                     tcagtCCTACGAATCGCATCGAATCTGTAGGCCGGAGAAGGCATTTTCGCCGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC       <  2:194625/95‑1                                                                                                     TCCGACCTACGAATCGCATCGAATCTGTAGGTCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC       <  1:3367924/100‑1                                                                                                     TCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC       >  1:1966150/1‑100                                                                                                     TCCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC       <  1:304759/100‑1                                                                                                      CCGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCT      >  2:1753120/1‑100                                                                                                       CGACCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTA     >  2:3629084/1‑100                                                                                                       CGACCTACGAATCGCATCGAATCTATAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATCGTCGGCTGCGATGCTTGCGCATCTTATCCGACCTA     >  2:3429347/1‑100                                                                                                        GACCTACGAATCGCATCGAATCTGTAGGTCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTAC    <  1:1206789/100‑1                                                                                                          CCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAA  >  1:3478894/1‑100                                                                                                          CCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTAC    <  2:1985427/98‑1                                                                                                          CCTACGAATCGCAGCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC       <  2:1796569/95‑1                                                                                                                                                                                                               CATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/805909‑805804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACGAATCGCATCGAATCTGTAGGCCAGATAAGGCATTTTCGCAGCATCCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACAA  >  NC_000913/805836‑805934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.