New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1190580 =	NA (NA)	17 (0.130)	10/166	NT	NA	noncoding (1/23 nt)	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1190603 =	NA (NA)					intergenic (‑156/+13)	phoP/purB	response regulator in two‑component regulatory system with PhoQ/adenylosuccinate lyase

GCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1190683‑1190580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  >  NC_000913/1190603‑1190701                                                                                                                                                                                                             GCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTC                                                                                                         >  2:3786935/1‑100   CTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCG                                                                                                       >  1:3390119/1‑100    TGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGGGATGCTGTCCGG                                                                                                      <  1:2581365/100‑1    TGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCC                                                                                                        <  2:3857512/98‑1     GAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC                                                                                                     >  2:529257/1‑100     GAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC                                                                                                     >  2:3036066/1‑100     GAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTACCGGATGGCGATGCTGTCCGGC                                                                                                     >  1:1909245/1‑100                                            CACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGA                                                              >  1:557136/1‑100                                                                       CTCGTATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCG                                   >  1:1034317/1‑100                                                                       CTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑CTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGT                                  >  1:1282951/1‑100                                                                            ATCAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGCCCAATATAGTTAGCCGGCGTCATC                              >  2:1875474/1‑100                                                                              CAGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGC                            >  1:3444849/1‑100                                                                               AGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCT                           >  2:779604/1‑100                                                                               AGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCT                           >  2:779290/1‑100                                                                               AGTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCT                           >  1:758449/1‑100                                                                                GTGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAACTCGACCAATATAGTTAGCCGGCGTCATCGCTT                          >  1:194075/1‑100                                                                                 TGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTT                         >  1:3907477/1‑100                                                                                 TGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTT                         >  1:580777/1‑100                                                                                 TGCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTT                         >  2:1837913/1‑100                                                                                  GCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTC                        >  1:2045600/1‑100                                                                                  GCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTC                        >  2:1426668/1‑100                                                                                  GCCGGATGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACAAATATAGTTAGCCGGCGTCATCGCTTTC                        >  2:3496592/1‑100                                                                                        TGGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGG                  >  1:3820410/1‑100                                                                                         GGCGATGCTGTCCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGG                 <  1:1875489/100‑1                                                                                                    CCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCT      <  2:1551462/100‑1                                                                                                    CCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCT      <  2:2138381/100‑1                                                                                                    CCGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCT      <  2:1483325/100‑1                                                                                                     CGGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTT     >  2:2038846/1‑100                                                                                                      GGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCatg    >  1:2175994/1‑97                                                                                                      GGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTC    <  1:312237/100‑1                                                                                                      GGCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACAAATATAGTTAGACGGCGTCATCGCTTTCAGGCGGGCTTTCTCTT        <  1:1977504/96‑1                                                                                                       GCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCT   >  2:3596306/1‑100                                                                                                       GCACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCT   <  1:3151471/100‑1                                                                                                        CACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTn  <  1:3453093/100‑2                                                                                                        CACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  <  1:2282217/100‑1                                                                                                        CACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  <  1:1313354/100‑1                                                                                                                                                                                                             GCCTGAAAGCGATGACGCCGGCTAACTATATTGGTCGAGCTATCACGATGGTTGATGAGCTGAAATAAACCTCGTATCAGTGCCGGATGGCGATGCTGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1190683‑1190580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcACTGATACGAGGTTTATTTCAGCTCATCAACCATCGTGATAGCTCGACCAATATAGTTAGCCGGCGTCATCGCTTTCAGGCGGGCTTTCTCTTCTTCTG  >  NC_000913/1190603‑1190701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.