| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2133432 = | NA (NA) | 16 (0.120) | 7/164 | NT | NA | noncoding (1/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2133462 = | NA (NA) | noncoding (31/34 nt) | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GGATTATGGCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2133535‑2133432‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGA > NC_000913/2133462‑2133560 nGATTATGGCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATC > 2:2983774/2‑100GGATTATGGCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATC > 1:2967047/1‑100 cttccgatcTTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG < 1:247981/91‑1 TTATGGCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG < 1:2221894/100‑1 TTATGGCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCACCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG > 1:2463752/1‑100 GCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATCCGCACCGCCCCGTAGGCCGGATCAGGCGTTCACGCAGCCTCCGGCCagc < 2:1751763/100‑4 TACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGagatcggaag > 2:247976/1‑90 CGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACAGCCCCGTATGCCGGATAAGGCGTTCACGCAGCATCCGGCCcgccaacaag > 2:1362220/1‑90 TAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGG < 1:1511712/100‑1 GTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGC > 2:3145679/1‑100 GGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCAT > 1:1928954/1‑100 GGCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCAT > 1:2935307/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATA > 2:1165960/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGAAGTCGTTATTTCGCATACAAATTATATTCGTATTCGTAATAGCCATA > 1:45390/1‑100 GCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAAGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATA > 1:394702/1‑100 CCGGCTACGCCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGACGTCGTTCTTTCGCATCCGACATATATTCGTATTCGTAATAGCCATAA > 2:2177145/1‑100 CCGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAA > 1:483610/1‑100 CGGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAAT > 1:1957047/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATC > 2:228482/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATC > 2:3761206/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATC > 1:3092089/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATC > 1:1996920/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATC > 2:458393/1‑100 GGATAAGGCGTTCACGCCGCATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAAT > 1:1767089/1‑99 TCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCG < 1:533260/100‑1 TCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCG > 1:3496209/1‑100 CCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGG > 2:1533196/1‑100 CCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGG > 1:791774/1‑100 CCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGG > 2:3403437/1‑100 CCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGG > 1:1636710/1‑100 CGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGA > 2:1823382/1‑100 GGCCTACGGGGCGGTGCGAATGCAGGCGTCGCCATTACGCATCCGACTTATATTGGTATTCGTAATAGCCAAAATCCTGACACGCGCTGGAGCGGCGGAA > 2:347021/1‑100 CCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGA > 1:645173/1‑100 GGATTATGGCTATTACGAATACGAATATAAGTCGGATGCGAAATAACGACGCCTGCATTCGCACCGCCCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2133535‑2133432‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGA > NC_000913/2133462‑2133560 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |