New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1486986 =114 (0.730)20 (0.150) 8/156 NT 16.5% intergenic (+23/‑249) hrpA/ydcF putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding
?NC_000913 1487021 = 102 (0.740)intergenic (+58/‑214) hrpA/ydcF putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding

TTATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1487093‑1486986
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggttttttATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAAA  >  NC_000913/1487021‑1487119
                                                                                                                                                                                                               
TTATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCG                                                                                                             <  2:348499/100‑1
 TATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGG                                                                                                            <  2:3717924/100‑1
 TATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGG                                                                                                            <  2:1184577/100‑1
  ATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGG                                                                                                           >  1:2467151/1‑100
  ATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGG                                                                                                            >  2:2135682/1‑99
   TTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGT                                                                                                          >  2:2788698/1‑100
   TTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGG                                                                                                           >  1:187753/1‑99
    TCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTT                                                                                                         <  1:1733499/100‑1
     CATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTT                                                                                                        >  2:4297554/1‑100
      ATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTT                                                                                                       >  2:3954041/1‑100
                                                                 GAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCT                                            >  2:2842797/1‑100
                                                                 GAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACAGTAAGGGTAAAAATTCAGATCTTCAGAAAAATACAATTGTC                                             >  1:1075200/1‑99
                                                                   ATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGC                                          >  2:350235/1‑100
                                                                   ATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTAAGAAAAATACAATTCTCTGC                                          >  2:917054/1‑100
                                                                     TAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAACACGGTAAGGGTAAAAATTCAGGCAATCCGAAAAATACAATTCTCTGCT                                         >  1:3771948/1‑99
                                                                     TAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTG                                        >  1:1442265/1‑100
                                                                      AATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGC                                       >  2:2300907/1‑100
                                                                      AATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGC                                       >  1:3636715/1‑100
                                                                      AATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGC                                       >  1:3636771/1‑100
                                                                       ATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCA                                      >  1:132530/1‑100
                                                                       ATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCA                                      >  2:3642670/1‑100
                                                                        TAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAA                                     >  2:1320722/1‑100
                                                                        TAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAA                                     >  1:4215098/1‑100
                                                                         AAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAG                                    >  2:2127154/1‑100
                                                                         AAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAG                                    >  2:1982122/1‑100
                                                                         AAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAG                                    >  2:385327/1‑100
                                                                         AAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAG                                    >  2:2799072/1‑100
                                                                         AAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAG                                    >  1:229878/1‑100
                                                                                CCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATA                             <  2:3636740/100‑1
                                                                                CCGGCGCTAAATGCTTACCGGGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATA                             <  2:3636796/100‑1
                                                                                            tagcactGGGGTTTTTATTAATTCTAAATCGGAAAGCGTAAAAATTCAGGAATTCAGAATAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTAC                 <  1:1854284/93‑1
                                                                                                    GGTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTC         <  2:969967/100‑1
                                                                                                     GTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCC        <  2:2348409/100‑1
                                                                                                     GTTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCC        <  1:842345/100‑1
                                                                                                      TTTTTTATTAATTCTAAAACGGTAAGGGTAAACATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCC        <  2:885508/99‑1
                                                                                                      TTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCn       <  2:900010/100‑2
                                                                                                      TTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCT       <  2:36554/100‑1
                                                                                                      TTTTTTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCT       <  2:1879483/100‑1
                                                                                                          TTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAA   >  1:1206034/1‑100
                                                                                                          TTATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAA   >  2:2630582/1‑100
                                                                                                           TATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAAA  <  2:2206606/100‑1
                                                                                                           TATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAAA  <  1:3899141/100‑1
                                                                                                           TATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAA   <  2:229112/99‑1
                                                                                                                                                                                                               
TTATTCATCTTGCAGCAGAGAATTGTATTTTTCTGAATTCCTGAATTTTTACCCTTACCGTTTTAGAATTAATAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1487093‑1486986
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggttttttATTAATTCTAAAACGGTAAGGGTAAAAATTCAGGAATTCAGAAAAATACAATTCTCTGCTGCAAGATGAATAATGTTTATCTACAGCATTTCCTTAAAA  >  NC_000913/1487021‑1487119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.