New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2700077	129 (0.820)	22 (0.160)	13/154	NT	15.1%	intergenic (+154/+40)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein/toxic membrane protein
	?	NC_000913	= 2700087	136 (1.000)					intergenic (+164/+30)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein/toxic membrane protein

CCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2699967‑2700077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggtgcgtccgGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  <  NC_000913/2700087‑2699989                                                                                                                                                                                                                    CCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATACTTATTAA                                                                                                                >  1:440086/1‑100  CTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAA                                                                                                               <  1:413979/100‑1  CTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAA                                                                                                                <  1:1823783/99‑1   TTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAG                                                                                                              >  2:3980259/1‑100    TAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGG                                                                                                             <  2:3308119/100‑1    TAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGG                                                                                                             <  2:2032344/100‑1    TAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGG                                                                                                             <  2:3448393/100‑1     AACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGT                                                                                                            <  2:3081462/100‑1      ACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTG                                                                                                           <  2:3004368/100‑1       CGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGC                                                                                                          <  2:3315990/100‑1       CGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGC                                                                                                          >  2:1282135/1‑100       CGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGC                                                                                                          >  2:3911587/1‑100       CGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATATGCGCAGACACTTATTTATAGTTATTAAAGGT                                                                                                            >  1:1566355/1‑98        GCCATTATATTTATTTAATTGATGACAGTAGCATAATCATTCACGAAGTTAATTTAGATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCG                                                                                                         <  1:2879316/100‑1           ATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCC                                                                                                      <  2:3460508/100‑1           ATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCC                                                                                                      <  1:4077488/100‑1           ATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCC                                                                                                      >  2:4077518/1‑100            TTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCG                                                                                                     <  2:2652396/100‑1                      TTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGT                                                                                           <  2:93247/100‑1                              TGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCA                                                                                   <  1:860128/100‑1                                ACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACC                                                                                 <  1:4163989/100‑1                                ACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACC                                                                                 <  1:3439974/100‑1                                ACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACC                                                                                 <  2:63627/100‑1                                ACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACC                                                                                 <  2:600543/100‑1                                 CATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCT                                                                                <  2:4297678/100‑1                                  ATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT                                                                               <  1:2086686/100‑1                                  ATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT                                                                               <  1:396405/100‑1                                  ATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTT                                                                               <  1:3595302/100‑1                                   TTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTT                                                                              <  1:1581746/100‑1                                   TTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTT                                                                              <  1:1128434/100‑1                                   TTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTT                                                                              <  2:3026670/100‑1                                   TTAGCATAAGCATTCACTAAATTAATTTATATAGTATCTGCCCACACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTT                                                                              <  1:1128433/100‑1                                    TAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCAC                                                                                  <  1:1291964/95‑1                                     AGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAA                                                                            <  1:1698990/100‑1                                       CATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATA                                                                          <  2:141463/100‑1                                                           ATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGG                                                      <  1:865404/100‑1                                                                      ATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGAGTCCGGTGAACCAGTCGGACGCAACTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATA                                           <  1:4312321/100‑1                                                                         tcCCCAGACACTTATTTAGAGTTATTTAAGGTGATTCCGGTGAAACAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATA                                         <  1:871654/97‑1                                                                                             GTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTA                    <  2:636311/100‑1                                                                                             GTTATTAAAGGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTA                    <  2:638010/100‑1                                                                                                      GGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGT           >  2:4367972/1‑100                                                                                                      GGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGT           >  1:485865/1‑100                                                                                                      GGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGT           <  2:3711021/100‑1                                                                                                      GGTGCGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTAAATAAATTAACTTAGTGAATGATTATGCT                >  1:3165248/1‑95                                                                                                         GCGTCCGGTTAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCAT        <  1:1370921/100‑1                                                                                                          CGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATC       <  1:2120384/100‑1                                                                                                          CGTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATC       >  2:3795017/1‑100                                                                                                           GTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCA      >  2:395348/1‑100                                                                                                           GTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCA      >  1:4302625/1‑100                                                                                                           GTCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTCAGTGAATGATTATGCTAATGTCATCA      <  2:2680588/100‑1                                                                                                            TCCGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAA     <  1:4243567/100‑1                                                                                                              CGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATT   <  1:1890402/100‑1                                                                                                              CGGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATT   <  2:2024655/100‑1                                                                                                               GGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  <  2:3792234/100‑1                                                                                                               GGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  <  2:401509/100‑1                                                                                                               GGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  <  1:2856082/100‑1                                                                                                               GGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  >  2:130433/1‑100                                                                                                               GGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  <  2:1144847/100‑1                                                                                                                                                                                                                    CCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2699967‑2700077 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggtgcgtccgGTGAACCAGTCGGACGCACCTTTAATAACTATAAATAAGTGTCTGGGCAGATACTATATAAATTAACTTAGTGAATGATTATGCTAATGTCATCAATTA  <  NC_000913/2700087‑2699989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.