New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3231252 =NA (NA)20 (0.140) 10/164 NT NA noncoding (1/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 3231282 = NA (NA)noncoding (31/283 nt) REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 258 total aligned reads displayed.

ACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACT  >  NC_000913/3231153‑3231351
                                                                                                   |                                                                                                   
gcggagaaggcgttcacgccgcatccgcctgtggcgcggtgcagttgccggatgcaacgcttgccgcgtgttatccggccaggaggattgcacatgtagg                                                                                                     >  1:486693‑M1/100‑100 (MQ=255)
 cggataaggcgttcacgccgcatccgccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtaggg                                                                                                    >  2:3667090‑M1/99‑100 (MQ=255)
 cAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTgg                                                                                                    >  1:1701935/1‑100 (MQ=255)
   ggCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCg                                                                                                  >  1:1383458/1‑100 (MQ=255)
   ggCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCg                                                                                                  >  2:1619899/1‑100 (MQ=255)
   gataaggcgttcacgccgcatccgccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCg                                                                                                  <  2:3645569‑M1/4‑1 (MQ=255)
   gataaggcgttcacgccgcatccgccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCg                                                                                                  <  2:624763‑M1/4‑1 (MQ=255)
      aaggcgttcacgccgcatccgccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGAt                                                                                               >  2:3449597‑M1/94‑100 (MQ=255)
         caGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcg                                                                                            >  1:3902078/1‑100 (MQ=255)
         caGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATg                                                                                              <  1:4076703/98‑1 (MQ=255)
           gCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcggc                                                                                          >  1:4117188/1‑100 (MQ=255)
           gCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcggc                                                                                          >  1:3605038/1‑100 (MQ=255)
           gCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcg                                                                                            <  1:1301507/98‑1 (MQ=255)
            cAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcggcg                                                                                         <  2:4123911/100‑1 (MQ=255)
            cAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcggcg                                                                                         <  1:2821270/100‑1 (MQ=255)
            cAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATgcggcg                                                                                         <  1:4174894/100‑1 (MQ=255)
               ggCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTaa                                                                                      >  1:624762/1‑100 (MQ=255)
                gcgcACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGAtaaggcgttta                                                                                     <  1:712657/100‑11 (MQ=255)
                    aCCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGcc                                                                                 <  2:3983928/100‑1 (MQ=255)
                     ccAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCACCTGCTGGCGGATGCGGCGTAAACGCCt                                                                                >  2:64050/1‑100 (MQ=255)
                     ccAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCt                                                                                >  2:1456481/1‑100 (MQ=255)
                     ccAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCt                                                                                >  2:2704777/1‑100 (MQ=255)
                       tccgccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcaactgctgGCGGATGCGGCGTAAACGCCTTa                                                                              >  1:2344133‑M1/77‑99 (MQ=255)
                       aaaTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTa                                                                              <  1:3295183/100‑1 (MQ=255)
                        aaTTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTAt                                                                             >  1:4231637/1‑100 (MQ=255)
                         aTTTCTCCTGGAGTGCCGCGCATTTGTATGTGTTGTATCACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATc                                                                            <  1:1521018/100‑1 (MQ=255)
                          tttCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATcc                                                                           <  2:3209230/100‑1 (MQ=255)
                          gccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:1698828‑M1/74‑100 (MQ=255)
                          gccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:2947177‑M1/74‑100 (MQ=255)
                          gccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATcc                                                                           >  2:2515300‑M1/74‑100 (MQ=255)
                           ccagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCg                                                                          >  1:1987170‑M1/73‑100 (MQ=255)
                            cagtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCGc                                                                         >  2:100620‑M1/72‑100 (MQ=255)
                             ctcCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGcc                                                                        <  1:2923627/100‑1 (MQ=255)
                             ctcCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGcc                                                                        >  2:2833035/1‑100 (MQ=255)
                             ctcCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATGTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGcc                                                                        <  1:2451983/100‑1 (MQ=255)
                             agtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCGcc                                                                        >  1:3470331‑M1/71‑100 (MQ=255)
                              gtggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCGccc                                                                       >  1:1354668‑M1/70‑100 (MQ=255)
                               tggcgcggtgcagttgccggatgcaacgcttgccgcgttttatccggccaggaggattgcacatgtagGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                      >  1:874394‑M1/69‑100 (MQ=255)
                               ccTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCt                                                                      <  2:4402800/100‑1 (MQ=255)
                                cTGGATTGCCGCGCATTTGTATATGTTGTATAACTATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTa                                                                     <  2:1359949/100‑1 (MQ=255)
                                 tGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTAc                                                                    >  2:1937429/1‑100 (MQ=255)
                                 tGGAGTGCCGCGCATTTCTATATGTTTTATAACGATTATTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTa                                                                     <  2:840215/99‑1 (MQ=255)
                                  ggAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACa                                                                   <  1:467905/100‑1 (MQ=255)
                                  ggAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACa                                                                   >  1:1904413/1‑100 (MQ=255)
                                   gAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAt                                                                  <  2:3803672/100‑1 (MQ=255)
                                    aGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtg                                                                 <  2:1510071/100‑1 (MQ=255)
                                    aGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtg                                                                 >  2:1048681/1‑100 (MQ=255)
                                      tGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACAtgtg                                                               <  2:1208299/100‑1 (MQ=255)
                                       gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                              <  2:3130057/100‑1 (MQ=255)
                                       gCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGc                                                              <  2:2655624/100‑1 (MQ=255)
                                         cgcgCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCaa                                                            >  1:1016484/1‑100 (MQ=255)
                                              aTTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAAtcctc                                                       >  2:2774641/1‑100 (MQ=255)
                                                 tGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTg                                                    <  1:3772935/100‑1 (MQ=255)
                                                    atatGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAATGCCTTATCCGCTCTACATGTGCAATCCTCCTGGcc                                                 <  1:3411844/100‑1 (MQ=255)
                                                     tatGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCg                                                <  2:1352160/100‑1 (MQ=255)
                                                      atGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCgg                                               >  1:3560674/1‑100 (MQ=255)
                                                       tgttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGa                                              <  1:2284115/100‑1 (MQ=255)
                                                         ttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATa                                            <  1:2639114/100‑1 (MQ=255)
                                                         ttgtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATa                                            >  2:728978/1‑100 (MQ=255)
                                                           gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaa                                          >  2:857116/1‑100 (MQ=255)
                                                           gtATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaa                                          >  1:42641/1‑100 (MQ=255)
                                                            tataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaaa                                         >  2:2358411/1‑100 (MQ=255)
                                                            tataACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATaaaa                                         >  1:801940/1‑100 (MQ=255)
                                                              taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                       >  2:1230290/1‑100 (MQ=255)
                                                              taACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcg                                       >  2:2127565/1‑100 (MQ=255)
                                                               aaCGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAAcgc                                      <  1:3431293/100‑1 (MQ=255)
                                                                 cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                    <  2:1855339/100‑1 (MQ=255)
                                                                 cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                    <  2:3933516/100‑1 (MQ=255)
                                                                 cGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTAGCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCgg                                    <  1:4331771/100‑1 (MQ=255)
                                                                   aTTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCa                                  >  1:3165325/1‑100 (MQ=255)
                                                                    ttttttCCTTAATCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCaa                                 >  1:2530186/1‑100 (MQ=255)
                                                                    ttttttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCaa                                 >  1:544523/1‑100 (MQ=255)
                                                                      ttttCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGc                               >  1:1610402/1‑100 (MQ=255)
                                                                          ccGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                           <  1:3915787/100‑1 (MQ=255)
                                                                           cGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTg                           >  2:2229201/1‑99 (MQ=255)
                                                                           cGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGc                          >  1:783937/1‑100 (MQ=255)
                                                                           cGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGc                          <  1:2148131/100‑1 (MQ=255)
                                                                               aGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATcc                      >  1:14324/1‑100 (MQ=255)
                                                                               aGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATcc                      <  1:977358/100‑1 (MQ=255)
                                                                               aGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATcc                      <  2:1238725/100‑1 (MQ=255)
                                                                                gCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCg                     <  2:3036818/100‑1 (MQ=255)
                                                                                gCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCg                     <  2:403996/100‑1 (MQ=255)
                                                                                  aataatTTGCAACTGCTGGCTGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGc                   <  2:4368210/100‑1 (MQ=255)
                                                                                  aataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGc                   <  2:1066403/100‑1 (MQ=255)
                                                                                  aataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGc                   <  1:1757029/100‑1 (MQ=255)
                                                                                   ataatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCa                  <  2:2029142/100‑1 (MQ=255)
                                                                                    taatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCaa                 >  1:116619/1‑100 (MQ=255)
                                                                                     aatTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAAc                <  1:2774624/100‑1 (MQ=255)
                                                                                      atTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACt               <  2:1740788/100‑1 (MQ=255)
                                                                                       tttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTg              >  2:2577117/1‑100 (MQ=255)
                                                                                       tttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTg              >  2:523347/1‑100 (MQ=255)
                                                                                        ttGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGc             <  1:2221941/100‑1 (MQ=255)
                                                                                          gCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCAc           <  1:4030386/100‑1 (MQ=255)
                                                                                           cAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCAcc          >  2:2410658/1‑100 (MQ=255)
                                                                                              ctgctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACcgcg       >  1:643605/1‑100 (MQ=255)
                                                                                                gctgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGcc     >  1:3250812/1‑100 (MQ=255)
                                                                                                  tgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCAc   <  1:1619892/100‑1 (MQ=255)
                                                                                                  tgGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCAc   >  1:95690/1‑100 (MQ=255)
                                                                                                   ggCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCGATCGTCCTGGCCGGGTAAAGCGCGGCAAGCTGTCCATCCGGCAACCGCACCGCGcccc   >  1:1850829/1‑97 (MQ=18)
                                                                                                   GGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACt  <  2:3542454‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
ACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATATGTTGTATAACGATTTTTTCCGTAAGCAATAATTTGCAACTGCTGGCGGATGCGGCGTAAACGCCTTATCCGCCCTACATGTGCAATCCTCCTGGCCGGATAAAACGCGGCAAGCGTTGCATCCGGCAACTGCACCGCGCCACT  >  NC_000913/3231153‑3231351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.