New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1735983 =	NA (NA)	6 (0.070)	4/166	NT	NA	noncoding (1/74 nt)	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	1736008 =	NA (NA)					noncoding (26/74 nt)	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences

CCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1736015‑1735983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCT  >  NC_000913/1736008‑1736106                                                                                                                                      CCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTG                                  >  1:385498/1‑100  CGCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGT                                 >  1:311098/1‑100   GCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTC                                >  1:673948/1‑100   GCGTAGGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTC                                >  2:1928165/1‑100        GGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAA                           >  1:1337875/1‑100        GGCCTGATAAGCGTAGCGCTTCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAA                           >  2:1615254/1‑100                             CAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCC      <  1:61322/100‑1                             CAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCAGCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATC       <  2:67483/99‑1                               GGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTT    >  2:173080/1‑100                                 CCTACGTGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCT  <  1:1425166/100‑1                                                                                                                                      CCGCGTAGGCCTGATAAGCGTAGCGCTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1736015‑1735983 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGCAACTGTAACGCAGAAGGTTATCCTTCT  >  NC_000913/1736008‑1736106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.