| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1735983 = | NA (NA) | 6 (0.070) | 4/166 | NT | NA | noncoding (1/74 nt) | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 1736008 = | NA (NA) | noncoding (26/74 nt) | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGC > NC_000913/1735884‑1736079 | agaaggataaccttctgcgttacagttgctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccacgtagg < 1:1425166‑M1/1‑1 (MQ=255) cACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGcc < 2:1148492/100‑1 (MQ=255) aaggataaccttctgcgttacagttgctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGcc > 2:173080‑M1/98‑100 (MQ=255) ggataaccttctgcgttacagttgctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTg < 1:61322‑M1/5‑1 (MQ=255) cGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTg < 1:1471678/100‑1 (MQ=255) gataaccttctgcgttacagttgctgacaacgtgcgatttatcttgccggctgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTg < 2:67483‑M1/5‑1 (MQ=255) gTCCTGGCTATCTTGATCACTTCTAGGCGCCGGAGAACTGGGAATTCGTAGCTAAACATCTCGCTGCATAATAACTGATTGCAAATTCAGCATTGCCTGa < 1:1531543/100‑1 (MQ=255) gTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGa > 2:106298/1‑100 (MQ=255) cTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAgc > 2:1783003/1‑100 (MQ=255) tGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAgcg > 1:2587620/1‑100 (MQ=255) tGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAgcg > 1:2257736/1‑100 (MQ=255) gCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCt < 1:898751/100‑1 (MQ=255) aTCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACg > 1:2122287/1‑100 (MQ=255) tCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGc < 1:2375956/100‑1 (MQ=255) cTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCt < 1:506777/100‑1 (MQ=255) tGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCtt > 2:2303879/1‑100 (MQ=255) tGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCtt > 2:2368589/1‑100 (MQ=255) aCTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAgg < 2:79971/100‑1 (MQ=255) cTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGc > 2:2215427/1‑100 (MQ=255) ttgctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGcc > 2:1615254‑M1/75‑100 (MQ=255) ttgctgacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGcc > 1:1337875‑M1/75‑100 (MQ=255) tGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTAc < 1:2291294/100‑1 (MQ=255) ggCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTAcgc > 2:2317021/1‑100 (MQ=255) gacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTAcgc > 1:673948‑M1/70‑100 (MQ=255) gacaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTAcgc > 2:1928165‑M1/70‑100 (MQ=255) gcgcTGATGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTAcgcg < 1:741645/100‑1 (MQ=255) acaacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTAcgcg > 1:311098‑M1/69‑100 (MQ=255) caacgtgcgatttatcttgccggatgcggcgagtgccttatccgacctacatcgatgatccgcgtagGCCTGAAGCGCTACGCTTATCAGGCCTACGCgg > 1:385498‑M1/68‑100 (MQ=255) cTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGat > 2:1271579/1‑100 (MQ=255) cTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGat < 1:860530/100‑1 (MQ=255) cTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGat < 1:1552035/100‑1 (MQ=255) cTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAAGAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGat > 2:688359/1‑100 (MQ=255) tGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatc > 1:2128382/1‑100 (MQ=255) ggTGATCTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatca > 1:1997430/1‑100 (MQ=255) ggTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCACATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatca > 1:52047/1‑100 (MQ=255) ggTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatca < 1:106297/100‑1 (MQ=255) tGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatcatc < 1:163709/100‑1 (MQ=255) tGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatcatc > 1:720558/1‑100 (MQ=255) gAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGatcatc < 2:1966974/99‑1 (MQ=255) gAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCg < 2:164936/100‑1 (MQ=255) gAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCg < 2:2139433/100‑1 (MQ=255) aaCTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGa < 1:758551/100‑1 (MQ=255) aCTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGAt < 2:541139/100‑1 (MQ=255) ctaggAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATg < 2:1787732/97‑1 (MQ=255) cTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATAGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATg < 1:225873/100‑1 (MQ=255) tGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGt > 1:2587053/1‑100 (MQ=255) gggAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTa > 2:2349705/1‑100 (MQ=255) gggAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTa < 2:453109/100‑1 (MQ=255) cGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGa < 2:2308364/100‑1 (MQ=255) tAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATa > 2:95907/1‑100 (MQ=255) tAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATa < 1:2489347/100‑1 (MQ=255) cGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAgg > 2:2187871/1‑100 (MQ=255) cGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAgg > 1:1953030/1‑100 (MQ=255) gAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGc < 1:1576476/100‑1 (MQ=255) gAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGc > 2:2507843/1‑100 (MQ=255) aaTCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTc > 2:703881/1‑100 (MQ=255) agctcGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcg < 2:2008976/98‑1 (MQ=255) ctcGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcgcc > 2:545654/1‑100 (MQ=255) ctcGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcgcc < 2:758225/100‑1 (MQ=255) tcGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTcgccg > 2:2217198/1‑100 (MQ=255) tcGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGCCCTACGCGGATCATCGATGTAGGTCGGAGAAGGCACTcgccg < 2:1749282/100‑1 (MQ=255) cATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCg > 1:1249498/1‑100 (MQ=255) ataataACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCgg > 2:319193/1‑100 (MQ=255) ataataACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCgg < 2:778043/100‑1 (MQ=255) taataaCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATTTAGGTCGGATAAGGCACTCGCCGCATCCGGc < 1:469361/100‑1 (MQ=255) taataaCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGc > 1:1970104/1‑100 (MQ=255) ataaCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCaa < 1:2303865/100‑1 (MQ=255) aCTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGAt > 2:2345016/1‑100 (MQ=255) cTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATa < 2:1544620/100‑1 (MQ=255) tGGCAAGTGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAAt < 1:2570096/99‑1 (MQ=255) ggCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCg < 1:1452516/100‑1 (MQ=255) cAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCa > 1:433456/1‑100 (MQ=255) cAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCa < 2:1453686/100‑1 (MQ=255) aaaTGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCAc < 1:1647506/100‑1 (MQ=255) aTGCAGTATTGCCTGAAGCGCTACGCTGATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCAc < 1:40679/98‑1 (MQ=255) aTGCAGCAGTGCCTGAAGCGCTACGCTGATCAGGCCTACGCGGACAATCGCTGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACg < 1:613038/99‑1 (MQ=38) tGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGCTAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGtt > 1:528853/1‑100 (MQ=255) tGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGtt > 1:927097/1‑100 (MQ=255) tGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGtt > 2:1137396/1‑100 (MQ=255) cagcaTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGt > 2:2242533/1‑100 (MQ=255) agcaTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTc < 2:221731/100‑1 (MQ=255) caTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAg > 1:1856919/1‑100 (MQ=255) caTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAg < 2:975036/100‑1 (MQ=255) aTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGc < 2:523105/100‑1 (MQ=255) aTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGc < 2:1732460/100‑1 (MQ=255) aTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGc < 1:2500584/100‑1 (MQ=255) aTTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGAGGTAGGTCGGATAAGGCACTGGCCGCATCCGGCAAGATAAATCGCACGTTGTCAg > 2:796957/1‑99 (MQ=255) | TGCACGTCCTGGCTATCTGGAGCACTTCTGGGCGCTGGTGAACTGGGAATTCGTAGCGAAAAATCTCGCTGCATAATAACTGATGGCAAATGCAGCATTGCCTGAAGCGCTACGCTTATCAGGCCTACGCGGATCATCGATGTAGGTCGGATAAGGCACTCGCCGCATCCGGCAAGATAAATCGCACGTTGTCAGC > NC_000913/1735884‑1736079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |