| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1944219 = | NA (NA) | 12 (0.140) | 9/164 | NT | NA | noncoding (1/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 1944249 = | NA (NA) | noncoding (31/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
GCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1944324‑1944219‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTT > NC_000913/1944249‑1944347 GCATCTGGCACTGGCAATATGCCTGATGCCACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCA < 1:1558797/100‑1GCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCA > 1:2116532/1‑100 TCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCC > 1:611600/1‑100 TCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCC < 2:2266393/100‑1 TCCGGCACTGGCAATATGCCTGATGCGACGCTCTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCTGCATC < 1:1707900/99‑1 CCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCG > 1:63039/1‑100 ATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACAAATGTGTTCGGTATCTCTGGTAGTGCTGGTAAGACGCGAACAGCGTCGCATCAGG > 2:1997273/1‑100 GTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAG > 1:1250024/1‑100 AGGTCGGATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGCAAGACGCGAACAACGTCCCATCCGGCCTATTCCCAGT > 1:956199/1‑99 GGTCGGATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGC > 1:1616174/1‑100 GTCGGATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCC > 1:1845450/1‑100 CGGATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGG > 1:1471832/1‑100 CGGATAAGGCGCTCGCGCCGCATCCGACAAATGTGTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCG > 2:1517779/1‑100 GATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCGGTGCCGGAT > 2:2304128/1‑100 GATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGAT > 1:1143281/1‑100 GATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGAT > 2:1030033/1‑100 ATAAGGCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATG > 2:1325124/1‑100 GCGCTCGCGCCGCATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCG < 1:1325117/100‑1 ATCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATC > 2:1807448/1‑100 TCCGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCC < 2:1443611/100‑1 CGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCCTATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGA > 2:855284/1‑100 CGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGA < 2:1636233/100‑1 CGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGA > 1:941375/1‑100 CGACCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGA < 1:2358046/100‑1 GACCTCCG‑GTTCGGTATCTCTGGTAGCCCTGGTAAGACCCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGAC < 1:724212/100‑1 CCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTT > 1:569089/1‑100 CCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTT > 2:630598/1‑100 GCATCCGGCACTGGCAATATGCCTGATGCGACGCTGTTCGCGTCTTACCAGGACTACCAGAGATACCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1944324‑1944219‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgacCTACG‑GTTCGGTATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTT > NC_000913/1944249‑1944347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |