New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2794135	NA (NA)	14 (0.160)	9/168	NT	NA	noncoding (108/136 nt)	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 2794163	NA (NA)					noncoding (136/136 nt)	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences

GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2794037‑2794135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA  <  NC_000913/2794163‑2794060                                                                                                                                                                                                             GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG                                                                                                         <  1:1336672/100‑1    GCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG                                                                                                      >  2:1561102/1‑100     CTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGG                                                                                                     <  2:1640042/100‑1                        tccgatctTCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACC                                                                                  <  2:1224759/92‑1                             GGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGTAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCC                                                                             <  1:1618776/100‑1                             GGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCC                                                                             <  2:119204/100‑1                                TCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCagatcgga                                                                          >  1:1224755/1‑92                                TCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC                                                                          <  1:2363157/100‑1                                 CCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGATATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAA                                                                           <  1:2058702/98‑1                                  CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACAT                                                                        <  1:2858/100‑1                                   AGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATA                                                                       <  1:1730342/100‑1                                   AGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATA                                                                       <  2:814825/100‑1                                     GTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGA                                                                     <  2:1599524/100‑1                                               GCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTG                                                           <  2:473481/100‑1                                                    TACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCAC                                                      <  2:1033133/100‑1                                                    TACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCAC                                                      <  2:2335187/100‑1                                                                                        AAATCTATGTTTGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCC                  <  2:1762714/100‑1                                                                                                    GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC      >  1:837882/1‑100                                                                                                    GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC      >  1:2530670/1‑100                                                                                                     CCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCC     >  2:2494119/1‑100                                                                                                      CGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCG    <  1:2522998/100‑1                                                                                                      CGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCG    >  1:1808513/1‑100                                                                                                       GGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT   <  2:1599589/100‑1                                                                                                        GAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA  <  1:1847304/100‑1                                                                                                        GAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA  <  2:994567/100‑1                                                                                                                                                                                                             GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2794037‑2794135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA  <  NC_000913/2794163‑2794060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.