| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4229380 = | NA (NA) | 16 (0.190) | 7/164 | NT | NA | noncoding (5/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4229413 = | NA (NA) | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4229485‑4229380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > NC_000913/4229413‑4229511 GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCGTGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTA < 2:2235801/100‑1GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTA < 2:945162/100‑1GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTA > 2:767060/1‑100 CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTAAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGAAGCTTGACGCGTCTTAT > 1:1026023/1‑100 GGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATC < 1:722507/100‑1 GTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGTATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCA < 2:1442431/100‑1 GTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCA < 2:1443045/100‑1 CCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC < 2:1590404/100‑1 CGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCATGATGCGACGCTTGACGCGTCTTATCAGacc > 1:2207644/1‑97 CTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGcc < 1:1922157/97‑3 TCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTT > 2:2571439/1‑100 CATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTC > 2:1483312/1‑100 CATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTC > 1:103257/1‑100 CATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTC > 1:209831/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 1:1986948/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:1888991/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:828603/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:2225573/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 1:1285272/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:2357974/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATGCACTTAAAAACGGTGACCAGCTTCCAGC > 2:2240009/1‑100 TGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCG > 2:2351688/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGG > 1:1722081/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCG > 1:922376/1‑99 CCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCACTTCACTTAAAAACGGTGACCAGCTTCCAGCG > 1:633199/1‑98 TGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAC > 2:692338/1‑100 TCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCATCCTTAAAC < 1:1568448/98‑1 GGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATA < 2:2231388/100‑1 CACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG < 2:2065459/100‑1 GCGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4229485‑4229380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG > NC_000913/4229413‑4229511 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |