New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2393131 =	NA (NA)	6 (0.070)	6/164	NT	NA	noncoding (1/36 nt)	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2393163 =	NA (NA)					noncoding (33/36 nt)	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2393236‑2393131 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgac‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATG  >  NC_000913/2393163‑2393260                                                                                                                                                                                                               TGGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCA                                                                                                           <  1:1035218/100‑1  GGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCAT                                                                                                          >  1:1654118/1‑100    TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC                                                                                                        <  2:1028021/100‑1    TGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCC                                                                                                        >  2:1318317/1‑100     GCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCG                                                                                                       >  2:1294342/1‑100                                           GTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATC                                                                >  1:902748/1‑100                                                                  AGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATC                                          >  2:1709028/1‑100                                                                            TCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAG                               <  2:902744/100‑1                                                                            TCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGATCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAG                               >  2:1062793/1‑100                                                                              GGATAAGCCGCCTTCGCGGTGCATCCGACACTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGC                              >  2:770650/1‑100                                                                               GATAAGCCGCCTTCGCGGTGCATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCCCAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCAC                            >  1:296140/1‑100                                                                                                ccgatctCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGC           <  2:1421101/93‑1                                                                                                    ATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCTAGCACCACGACCGCAACGATGCTCAT       >  2:2079785/1‑100                                                                                                    ATCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCAT       >  1:671945/1‑100                                                                                                     tcaGAC‑TTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATG      >  2:515085/4‑100                                                                                                     TCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATG      <  2:1344010/100‑1                                                                                                     TCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATG      >  2:183694/1‑100                                                                                                     TCCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATG      <  2:1683489/100‑1                                                                                                      CCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCTTCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGG     >  2:1655700/1‑100                                                                                                      CCGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGG     >  2:282521/1‑100                                                                                                       CGAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCagatcgg    >  1:1421109/1‑93                                                                                                        GAC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACACTCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGAT   >  2:597805/1‑100                                                                                                         AC‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATG  <  1:254766/100‑1                                                                                                                                                                                                               TGGTGCTGGCACTGTTGATGGTACTGCGTTGAGTTAAGGATTGTGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2393236‑2393131 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgac‑CTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCCAGCACCACGACCGCACCGATGCTCATGGATG  >  NC_000913/2393163‑2393260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.