New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2393131 =NA (NA)6 (0.070) 6/164 NT NA noncoding (1/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 2393163 = NA (NA)noncoding (33/36 nt) REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 120 total aligned reads displayed.

TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCC  >  NC_000913/2393033‑2393229
                                                                                                  |                                                                                                  
catccatgagcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGt                                                                                                   <  1:254766‑M1/2‑1 (MQ=255)
 atccatgagcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggagtgtgggattgcccctgggcatataagaacgtagGTc                                                                                                  >  2:597805‑M1/98‑100 (MQ=255)
  ccgatctgcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCg                                                                                                 >  1:1421109‑M1/97‑100 (MQ=255)
   taACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGtctc                                                                                                  >  2:970372/1‑98 (MQ=255)
   taACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCgg                                                                                                <  2:1799319/100‑1 (MQ=255)
   taACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTAAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCgg                                                                                                >  2:970192/1‑100 (MQ=255)
   ccatgagcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCgg                                                                                                >  2:282521‑M1/96‑100 (MQ=255)
    catgagcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCGGa                                                                                               >  2:183694‑M1/95‑100 (MQ=255)
    catgagcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCGGa                                                                                               <  2:1683489‑M1/6‑1 (MQ=255)
    aaCATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGa                                                                                               <  1:496317/100‑1 (MQ=255)
     atgagcatcgttgcggtcgtggtgctagcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCGGAt                                                                                              >  2:2079785‑M1/94‑100 (MQ=255)
     atgagcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCGGAt                                                                                              >  1:671945‑M1/94‑100 (MQ=255)
     aCATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAt                                                                                              <  1:1208333/100‑1 (MQ=255)
      cATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATg                                                                                             <  2:1399004/100‑1 (MQ=255)
       aTGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGc                                                                                            <  2:2265784/100‑1 (MQ=255)
         gcatcggtgcggtcgtggtgctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtaggtcgagatcgg                                                                                          <  2:1421101‑M1/11‑8 (MQ=255)
          gCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCAcc                                                                                         >  1:268460/1‑100 (MQ=255)
           cGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGAtaagccg                                                                                        >  2:487508/1‑94 (MQ=255)
               cTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGaa                                                                                    <  2:1087925/100‑1 (MQ=255)
                tttATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAg                                                                                   <  1:827403/100‑1 (MQ=255)
                tttATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAg                                                                                   >  1:1000573/1‑100 (MQ=255)
                     tCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcggc                                                                              <  1:1998434/100‑1 (MQ=255)
                     tCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcggc                                                                              <  2:89488/100‑1 (MQ=255)
                      ccTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAggcgg                                                                               >  2:93084/1‑98 (MQ=255)
                      ccTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCt                                                                             >  2:1738792/1‑100 (MQ=255)
                      ccTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCt                                                                             >  2:254765/1‑100 (MQ=255)
                      ccTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCt                                                                             >  1:509687/1‑100 (MQ=255)
                      ccTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCt                                                                             <  1:429216/100‑1 (MQ=255)
                       cTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCtt                                                                            >  2:1036855/1‑100 (MQ=255)
                        ttGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGCAGGCGGCTTa                                                                           >  1:962594/1‑100 (MQ=255)
                        ttGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCttn                                                                           <  2:173148/100‑2 (MQ=255)
                         tGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGCAGGTAGTGTCAGATGCACCGCAAAGGCGGCTTAt                                                                          >  1:1277249/1‑100 (MQ=255)
                          gtgctggcactgttgatggtactgcgttgagttaaggattgggggattgcccctgggcatataagaacgtagGTCGGATGCACCGCGAAGGCGGCTTATc                                                                         >  1:296140‑M1/73‑100 (MQ=255)
                          gTAAAAGGCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCGTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATc                                                                         <  2:2268516/100‑1 (MQ=255)
                           gctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagtGTCGGATGCACCGCGAAGGCGGCTTATcc                                                                        >  2:770650‑M1/72‑100 (MQ=255)
                            aaaaGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCg                                                                       >  1:1934323/1‑100 (MQ=255)
                             ctggcactgttgatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagGTCGGATGCACCGCGAAGGCGGCTTATCCGa                                                                      <  2:902744‑M1/31‑1 (MQ=255)
                              aaGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAc                                                                     <  1:1053212/100‑1 (MQ=255)
                              aaGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAc                                                                     <  1:1059628/100‑1 (MQ=255)
                               aGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGAcc                                                                    <  2:169938/100‑1 (MQ=255)
                                gTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCt                                                                   >  1:2280768/1‑100 (MQ=255)
                                   ccGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACg                                                                >  2:507866/1‑100 (MQ=255)
                                    cGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGt                                                               >  2:220194/1‑100 (MQ=255)
                                       gatggtactgcgttgagttaaggattgtgggattgcccctgggcatataagaacgtagtGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                            >  2:1709028‑M1/60‑100 (MQ=255)
                                       cAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCt                                                            <  2:434354/100‑1 (MQ=255)
                                         ggACCGGATTTTCAACGAATTCTCACGACAGAAAGTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          >  1:2310814/1‑100 (MQ=255)
                                         ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  2:721942/100‑1 (MQ=255)
                                         ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  2:1788661/100‑1 (MQ=255)
                                         ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  1:1502650/100‑1 (MQ=255)
                                         ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  2:1322199/100‑1 (MQ=255)
                                         ggACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTta                                                          <  2:2296517/100‑1 (MQ=255)
                                              ggATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGc                                                     <  1:216875/100‑1 (MQ=255)
                                               gATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGcc                                                    >  2:1788077/1‑100 (MQ=255)
                                                 ttttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCa                                                  >  2:823876/1‑100 (MQ=255)
                                                 ttttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCa                                                  >  1:485894/1‑100 (MQ=255)
                                                 ttttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCa                                                  <  2:1618125/100‑1 (MQ=255)
                                                  tttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAg                                                 >  1:373378/1‑100 (MQ=255)
                                                   ttCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgg                                                <  1:1643132/100‑1 (MQ=255)
                                                    tCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAggg                                               <  1:93992/100‑1 (MQ=255)
                                                    tCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAggg                                               >  1:1603848/1‑100 (MQ=255)
                                                     cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              <  2:2280749/100‑1 (MQ=255)
                                                     cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              <  2:269167/100‑1 (MQ=255)
                                                     cAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              >  1:1035074/1‑100 (MQ=255)
                                                     cAACGAACTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAgggg                                              >  1:1234041/1‑100 (MQ=255)
                                                      aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                             >  1:1347266/1‑100 (MQ=255)
                                                      aaCGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGc                                             <  1:520901/100‑1 (MQ=255)
                                                          aaTTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATc                                         <  2:1069599/100‑1 (MQ=255)
                                                              gattgtgggattgcccctgggcatataagaacgtagGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                     >  1:902748‑M1/37‑100 (MQ=255)
                                                              ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                     >  2:1252377/1‑100 (MQ=255)
                                                              ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCcac                                     <  1:1244424/100‑1 (MQ=255)
                                                              ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCca                                      >  1:1759299/1‑99 (MQ=255)
                                                              ctcACGACAGAAAATTCTCTTCGGACTGGGGGTAGTCTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGACAATCCcac                                     >  2:478627/1‑100 (MQ=255)
                                                                   gACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATcc                                >  1:1004468/1‑100 (MQ=255)
                                                                    aCAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCt                               >  2:20033/1‑100 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  2:2042276/100‑1 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  2:1934309/100‑1 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  2:1922472/100‑1 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  2:1874818/100‑1 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  1:983497/100‑1 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           >  2:844009/1‑100 (MQ=255)
                                                                        aaaaTTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGCTCTTATATGCCCAGGGGCAATCCCACAATCCTTAAc                           <  1:1659085/100‑1 (MQ=255)
                                                                             tctcTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAAc                      >  2:243666/1‑100 (MQ=255)
                                                                               tctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGc                    <  2:2060492/100‑1 (MQ=255)
                                                                                ctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCa                   >  2:270198/1‑100 (MQ=255)
                                                                                ctTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCa                   >  2:139514/1‑100 (MQ=255)
                                                                                  tCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGt                 <  2:1698566/100‑1 (MQ=255)
                                                                                  tCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGt                 <  2:1328592/100‑1 (MQ=255)
                                                                                  tCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGt                 >  1:413192/1‑100 (MQ=255)
                                                                                     gACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTAcc              >  1:2072788/1‑100 (MQ=255)
                                                                                      aCTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCa             <  2:1742834/100‑1 (MQ=255)
                                                                                       cTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCAt            >  1:1987700/1‑100 (MQ=255)
                                                                                        tGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATc           <  1:1277668/100‑1 (MQ=255)
                                                                                         gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCTCACAATCCTTAACTCAACGCAGTACCATCa          >  1:1405684/1‑100 (MQ=255)
                                                                                         gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          <  1:1775923/100‑1 (MQ=255)
                                                                                         gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  1:1505377/1‑100 (MQ=255)
                                                                                         gggggTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCa          >  2:1850447/1‑100 (MQ=255)
                                                                                               aGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    >  1:85755/1‑100 (MQ=255)
                                                                                               aGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTg    <  2:1386987/100‑1 (MQ=255)
                                                                                                gtgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGc   <  2:509684/100‑1 (MQ=255)
                                                                                                 tgtCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGcc  <  2:1703873/100‑1 (MQ=255)
                                                                                                  |                                                                                                  
TAGTAACATGGCGATCTTTATTCCTTGTAAAAGTCCCGTCAGGACCGGATTTTCAACGAATTCTCACGACAGAAAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAACGCAGTACCATCAACAGTGCC  >  NC_000913/2393033‑2393229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.