| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 5565 = | NA (NA) | 11 (0.110) | 5/164 | NT | NA | noncoding (1/105 nt) | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 2430980 | NA (NA) | noncoding (52/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
TGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/5670‑5565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTGAA < NC_000913/2430980‑2430882 TGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCA > 2:4833/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCAT > 2:2169900/1‑100 CGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA < 2:2520669/100‑1 GGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG > 2:1260683/1‑100 GGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG < 2:1082797/100‑1 GATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGG < 1:1300048/100‑1 ATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC < 2:1784794/100‑1 CGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCC > 2:313715/1‑100 nTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCC > 1:2529033/2‑99 GGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATG > 2:1618302/1‑100 GGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATG > 2:1041092/1‑100 GCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC > 1:118119/1‑100 GCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC > 2:859727/1‑100 GCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC > 2:2136331/1‑100 GCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC > 2:2096861/1‑100 CCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCC > 2:2710387/1‑100 CCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCC > 2:2375828/1‑100 CTGATAAGACGCGCCAGCGTCGCATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCG > 1:1647778/1‑100 ATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCACGAATTGCCCGATGCCGCCAAGGCATAAAAAGTCGATG > 1:595915/1‑98 ATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACTCGCATTGCCCGATCCCGCAAAGGCATAACAAGTCGATGGC > 1:2449929/1‑100 ATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGC > 1:1799191/1‑100 TCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCG > 2:845370/1‑100 CAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGc > 2:1503148/1‑99 AGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTT > 2:1415219/1‑100 AGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTT < 1:2938169/100‑1 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGctg > 2:666091/1‑97 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG < 1:2808656/100‑1 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG > 2:1523163/1‑100 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG > 2:2301259/1‑100 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG < 1:1342483/100‑1 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG < 1:1321273/100‑1 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG < 2:762457/100‑1 GGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTT > 1:1103769/1‑99 GCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCACGCATTCCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTG < 2:3034636/99‑1 GCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTGA < 2:201628/100‑1 GCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTGA < 1:2308098/100‑1 CCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTGAA > 1:1753978/1‑100 CCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTGAA < 1:423728/100‑1 TGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACAAAAGCATGCAGATTCAATATATTGCAGAATTAACGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/5670‑5565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAAGGCATAAAAAGTCGATGGCGTTGAA < NC_000913/2430980‑2430882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |