| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2597686 = | NA (NA) | 8 (0.080) | 5/166 | NT | NA | noncoding (14/46 nt) | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 2597714 = | NA (NA) | noncoding (42/46 nt) | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GATACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2597790‑2597686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgaACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT > NC_000913/2597714‑2597812 GATACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAGTTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCA > 1:1703914/1‑100GATACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCA < 2:352719/100‑1GATACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCA > 2:347722/1‑100GATACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCA > 2:2805349/1‑100 TACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATC < 1:1142035/100‑1 TACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATC > 2:1132640/1‑100 TACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATC > 2:256489/1‑100 CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCTGCATCCG > 1:2402904/1‑100 CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCG > 2:966302/1‑100 CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCG > 1:2239635/1‑100 CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTCGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCG > 2:1095074/1‑100 CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGGAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGAATAAGGCGTTCACGCCGCATCCG > 2:2272999/1‑100 GCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA > 1:1400996/1‑100 GCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA > 1:601331/1‑100 GTAGTTCGGATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACG > 1:2039543/1‑100 TAGTTCGGATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGT > 1:2602945/1‑100 GTTCGGATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTT > 2:2224970/1‑100 GGATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGT > 1:2335563/1‑100 GGATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGT > 2:362866/1‑100 GGATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCCCGTTTTCCTGCAGACGCACACGTTTGC > 1:2705684/1‑98 GATAAGGCGTTCACGCCGCATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTA > 1:1616620/1‑100 ACGCCGTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAA > 1:1209666/1‑100 CCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCG > 1:296784/1‑100 CCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCG < 1:1243858/100‑1 CGAACTACGTCGGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTGTCCTGCAGACGGACACGTTTGCGTATCATATCAGAAAAAAGGGCCGG > 1:537071/1‑100 CGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGG > 1:863823/1‑100 CGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGG > 2:30933/1‑100 GAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGA > 2:2515213/1‑100 AACTCCGTCCGACAAACAAATTTCGTCAGAATTACCGCTAAAATCCCGTTTTCATGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT < 1:571957/100‑1 AACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT < 1:2878065/100‑1 AACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT < 1:1520528/100‑1 GATACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2597790‑2597686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgaACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT > NC_000913/2597714‑2597812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |