New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3485379	NA (NA)	9 (0.100)	6/162	NT	NA	noncoding (8/22 nt)	REP246 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP246 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 3485385	NA (NA)					noncoding (14/22 nt)	REP246 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP246 (repetitive extragenic palindromic) element; contains 1 REP sequences

GTACCGGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3485273‑3485379 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggataGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGACCC  <  NC_000913/3485385‑3485290                                                                                                                                                                                                             GTACCGGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACG                                                                                                         >  1:2593044/1‑100   ACCGGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCC                                                                                                       <  2:2352505/100‑1    CCGGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCG                                                                                                      <  2:2274891/100‑1     CGGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGG                                                                                                     <  2:732381/100‑1      GGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGCAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGA                                                                                                    <  1:1559768/100‑1      GGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGAGTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGG                                                                                                     >  1:2590467/1‑99                      CTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATAGTATTTTATCCGGC                                                                                    <  2:343861/100‑1                      CTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATAGTATTTTATCCGGC                                                                                    <  1:228279/100‑1                      CTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATAGTATTTTATCCGGC                                                                                    <  1:2903973/100‑1                       cttccgatctATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATAGTATTTTATCCGGCG                                                                                   <  2:907637/90‑1                             taGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGTGAGGAAAGAAAATCGAGCAACTCTGCTATTACGCCGGATAGTATTTTATCCGGAGTAATAG                                                                             <  1:157085/98‑1                                 ATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATAGTATTTTATCCGGCGagatcggaag                                                                         >  1:907635/1‑90                                                                                          CTGCTATTACGCCGGATAAAATACTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGTCTGCATAATTAATT                >  1:1974662/1‑100                                                                                             CTATTACGCCGGATAAAATACTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCA             >  1:1466756/1‑100                                                                                              TATTACGCCGGATAAAATACTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCAT            >  1:1212061/1‑100                                                                                               ATTACGCCGGATAAAATACTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCAATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCAT            >  1:2474675/1‑99                                                                                                  ACGCCGGATAAAATACTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATAAATTCCATTGC         >  2:1899765/1‑99                                                                                                    GCCGGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAG      >  2:1822837/1‑100                                                                                                    GCCGGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAG      <  2:377939/100‑1                                                                                                     CCGGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGA     >  2:2402276/1‑100                                                                                                      CGGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGAC    <  2:1265249/100‑1                                                                                                      CGGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGAC    <  2:370780/100‑1                                                                                                      CGGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGAC    >  1:1943765/1‑100                                                                                                       GGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGACC   <  1:2265865/100‑1                                                                                                       GGATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTCCCAGACC   <  2:1522175/100‑1                                                                                                        GATAGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGACCC  >  2:1651088/1‑100                                                                                                                                                                                                             GTACCGGGCGGCAAAATGGGTCTGGCAATGGAATTAATTATGCTGCCGCTGGTGCAACGATTGATGGAAGGAAAGAAAATCGAGTAACTCTGCTATTACGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3485273‑3485379 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggataGTATTTTATCCGGCGTAATAGCAGAGTTACTCGATTTTCTTTCCTTCCATCAATCGTTGCACCAGCGGCAGCATAATTAATTCCATTGCCAGACCC  <  NC_000913/3485385‑3485290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.