| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4168637 | 37 (0.360) | 17 (0.170) | 5/170 | NT | 32.5% | intergenic (+190/‑4) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4210001 | NA (NA) | intergenic (+152/‑42) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
GATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAAC > NC_000913/4168538‑4168736 | gATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTG > 1:311644‑M1/1‑100 (MQ=255)gATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTG < 2:1250699‑M1/100‑1 (MQ=255)gATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTG < 1:1162838‑M1/100‑1 (MQ=255) aTCAAGCTGAAAATTGAAACACTGAACAACGAGCGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtgt > 1:1911761/1‑100 (MQ=18) tCAAGCTGAAAATTGAAACACTTAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtgtg < 1:1653714/100‑1 (MQ=17) tCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTTGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtgtg < 1:1591830/100‑1 (MQ=18) tCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtgtg < 2:479544/100‑1 (MQ=33) tCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTtgtg < 2:1782161/100‑1 (MQ=33) aaGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAg > 2:355677/1‑100 (MQ=33) aGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAgg < 2:1407624/100‑1 (MQ=33) aGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAgg < 2:2752792/100‑1 (MQ=33) gCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt < 1:2759526/100‑1 (MQ=33) cTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATGGAAAGAAACATATTCGGGTTGTGAGGtt > 1:1695603/1‑100 (MQ=12) cTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGtt < 2:2812987/100‑1 (MQ=33) gAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTaa > 2:1935664/1‑100 (MQ=33) aaaaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg < 1:1140782/100‑1 (MQ=32) aaaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc < 2:549407/100‑1 (MQ=32) aaaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAACCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc < 1:1745795/100‑1 (MQ=17) aaTTGAAACACTGAACCACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCg < 2:2237659/100‑1 (MQ=17) aaTTGAAACACTGAACAACGCGAGTTGTTCGTGCGTCTCTAACATTTTCGCAACACGCTGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc < 2:1584519/99‑1 (MQ=11) aaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCg < 2:620685/100‑1 (MQ=33) aaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCg < 2:107067/100‑1 (MQ=33) aTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGa < 2:2890565/100‑1 (MQ=32) gAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa > 2:2296113/1‑100 (MQ=33) gAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTa < 1:996089/100‑1 (MQ=33) aaaCACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTaa < 1:182551/100‑1 (MQ=33) aaCACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAg < 2:146206/100‑1 (MQ=33) cacTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAgag > 1:2470857/1‑98 (MQ=17) cacTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg < 1:618335/100‑1 (MQ=33) acTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGt > 2:270332/1‑100 (MQ=33) cTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa < 1:1082959/100‑1 (MQ=33) cTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa > 1:812237/1‑100 (MQ=32) cTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTa < 2:232347/100‑1 (MQ=33) tGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTac < 1:208849/100‑1 (MQ=32) aacGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt < 2:1940968/100‑1 (MQ=33) aacGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt > 1:495337/1‑100 (MQ=33) aacGAGAGTTGTTCGTGAGTCTCTCAAAGTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt < 1:603863/100‑1 (MQ=17) acGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg < 2:1770984/100‑1 (MQ=33) acGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg < 1:2031107/100‑1 (MQ=33) acGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg < 1:328277/100‑1 (MQ=33) acGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg > 2:1861510/1‑100 (MQ=32) cGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACtgtg < 2:2776153/99‑1 (MQ=17) cGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg < 2:1882721/100‑1 (MQ=33) cGAGAGTTGTTCGTGAGTCTCTCAAATTTGCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg < 1:1261609/100‑1 (MQ=17) cGAGAGTTGTTCGTGAGTCTCTCAAATCTTCGCAACACGATGATGAATCGAAAGAAACATCTTCCGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg < 2:2565819/99‑1 (MQ=12) gagaGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGa > 2:2801083/1‑100 (MQ=32) agagTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGAt < 2:804559/100‑1 (MQ=31) gagTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAATCATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATg < 2:2206975/100‑1 (MQ=11) tctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaat > 1:2675683‑M1/1‑51 (MQ=255) ctcAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGtgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaatt > 2:184988‑M1/1‑50 (MQ=255) tcAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattt > 1:1155956‑M1/1‑49 (MQ=255) tcAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattt > 2:590515‑M1/1‑49 (MQ=255) cAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaatttt > 2:1975767‑M1/1‑48 (MQ=255) tCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaattttcagcttg > 1:775720‑M1/1‑41 (MQ=255) cGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaattttcagcttga > 1:1852968‑M1/1‑40 (MQ=255) cGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttga > 1:1717893‑M1/1‑40 (MQ=255) cGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttga > 2:1453123‑M1/1‑40 (MQ=255) cGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttga > 2:1600544‑M1/1‑40 (MQ=255) gCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcattgttcagtgtttcaattttcagcttgat > 1:752588‑M1/1‑39 (MQ=255) gCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaacattcatggttcagtgtttcaattttcagcttga > 2:1988123‑M1/1‑39 (MQ=255) gCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgacaattagagagactcacgaacaactctcggtgttcagtgtttcaattttcagcctga > 1:2693066‑M1/1‑39 (MQ=255) gCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgat > 2:2238527‑M1/1‑39 (MQ=255) gCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgat > 1:850373‑M1/1‑39 (MQ=255) aaTCGAAAGAAACATCATCGTGTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaag > 1:830115‑M1/1‑25 (MQ=255) cTTCGGGTTGcgaaaatttgagagactcacgaacaactctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaa < 1:1600540‑M1/100‑91 (MQ=255) gTTGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcac > 1:1266814‑M1/1‑4 (MQ=255) ttGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacc < 1:1881732‑M1/100‑98 (MQ=255) ttGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacc < 2:2614731‑M1/100‑98 (MQ=255) ttGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacc < 1:86611‑M1/100‑98 (MQ=255) gtgcgaaaatttgagtgactcacgaacaactttcgttgttcagtgtgtcaattttcagcttgatccagatgttgaaagagcaaatagctcaaacatcacc < 1:570012‑M1/99‑98 (MQ=255) tGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcaccc > 1:1674714‑M1/1‑2 (MQ=255) tGcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcaccc > 2:2664235‑M1/1‑2 (MQ=255) gcgaaaatttgagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccg > 2:744826‑M1/1‑1 (MQ=255) gcgaaaatttgagagactcacgaacaactttcgttgttaagtgtttcaattttgagcttgatacagatttttgaagagaaaatatctcaaacatccagag > 1:2026953‑M1/1‑1 (MQ=255) | GATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGTCGGTAAGGTGATATGAAC > NC_000913/4168538‑4168736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |