| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1165696 = | NA (NA) | 6 (0.070) | 5/156 | NT | NA | intergenic (+11/‑389) | ycfP/ndh | putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase |
| ? | NC_000913 | 1165728 = | NA (NA) | intergenic (+43/‑357) | ycfP/ndh | putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase | |||||
AAGAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1165802‑1165696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgatgcgCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCA > NC_000913/1165728‑1165826 AAGAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACC > 1:1914592/1‑100 AGAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCT < 1:1108885/100‑1 AGAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCT < 1:1995135/100‑1 AGAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCT < 2:1787078/100‑1 GAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTG < 2:2304153/100‑1 CGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTGATGC > 1:2448792/1‑100 CGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTGATGC > 2:2092060/1‑100 CCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGC > 1:2394820/1‑100 ATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATG > 2:1367738/1‑100 GGAGCGCATCAGGTACCGGCAAGGTTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTG > 1:2602099/1‑100 GCATCAGGTACCGGCAAGGTTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCG > 1:908437/1‑100 GCATCAGGTACCGGCAAGGTTACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCG > 1:1004106/1‑100 CATCAGGTACCGGCAAGGTTACATGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGC > 2:316019/1‑98 ttgctgcTACCGGATGCGATCCGAATTCTGTGGGTCGGATAAGGCGTCCACTCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGn < 2:710642/93‑2 TACCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGA > 2:1132646/1‑100 CCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAAC < 1:361194/100‑1 CCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAAC < 1:2045206/100‑1 CCTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAAC < 2:1286441/100‑1 CTGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACG < 1:2547753/100‑1 TGATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGC < 1:571826/100‑1 ATGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCC < 1:461069/100‑1 TGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCtt < 1:1787095/100‑3 TGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCT < 2:1156064/100‑1 TGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCT > 1:2472802/1‑100 TGCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCT > 1:1377855/1‑100 GCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTG < 1:569702/100‑1 GCGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTG > 2:2063934/1‑100 nGCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCNAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCACTG > 1:1057566/2‑99 GCTCCGAATTCTGTGTGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCA > 2:1750212/1‑100 GCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCA > 2:134553/1‑100 GCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCA < 2:2651391/100‑1 GCTCCAAACTCTGTAGCTCGGATAAGGCGCCCGCGTCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCA < 2:590046/100‑1 AAGAAGCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGGACGCCTTATCCGACCCACAGAATTCGGAGCGCATCAGGTACCGGCAAGGTTACCTGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1165802‑1165696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacctgatgcgCTCCGAATTCTGTGGGTCGGATAAGGCGTCCACGCCGCATCCGACAGTCGAGCATCAATGCCTGATGCGCTTCTTATCAGGCCTACCGAACGCCCTGCA > NC_000913/1165728‑1165826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |