| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1534913 = | NA (NA) | 4 (0.040) | 3/164 | NT | NA | noncoding (31/75 nt) | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3674381 = | NA (NA) | noncoding (1/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCACAGCGGTGATTTTGTTTCATGCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1535011‑1534913‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACA > NC_000913/3674381‑3674486 GCACAGCGGTGATTTTGTTTCATGCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATG > 1:2495921/1‑100 GCGGTGATTTTGTTTCATGCCGAATGTGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGA < 1:1320072/100‑1 CGGTGATTTTGTTTCATGCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGAT > 1:1209747/1‑100 GTGATTTTGTTTCATGCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGAT < 1:1317671/98‑1 ATGGGCAATTGATCTCGGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCC < 2:205595/98‑1 TGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:1073328/100‑1 GGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCAT < 1:1513023/100‑1 GGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATGCCGGATGCGGCGTAAACGCCTTATCCGGCAT < 1:2167044/100‑1 ATGCCGGATAAGGCGTTTACGCCGCATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAA > 2:2008229/1‑100 nCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATG > 1:192961/2‑100 GCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATG < 1:1249367/100‑1 GCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATG > 1:790395/1‑100 GATGTGGCGTAAACGCTTTATCCGGCATCCGATTTTATTAGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGC < 1:1853626/99‑1 GATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCA < 2:582511/100‑1 ATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCAC < 2:390156/100‑1 TGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACA < 2:1191644/100‑1 TGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCCCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCCTACAGCCATAATGCGCCCA > 1:111744/1‑100 GCACAGCGGTGATTTTGTTTCATGCCGAATGGGCAATTGAACTCTGAAACCGTTGTCTGATGCGCTTCGCCTGTCAGGTCTACAACCGGGCTAATGTATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1535011‑1534913‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACA > NC_000913/3674381‑3674486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |