New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 88491783 (0.800)17 (0.180) 10/160 NT 17.3% intergenic (+12/+29) mdfA/ybjH multidrug efflux system protein/uncharacterized protein
?NC_000913 = 884930 88 (0.940)intergenic (+25/+16) mdfA/ybjH multidrug efflux system protein/uncharacterized protein

TTAATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/884811‑884917
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcctgaTCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCG  <  NC_000913/884930‑884833
                                                                                                                                                                                                             
TTAATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAA                                                                                                           >  2:2832954/1‑100
   ATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGC                                                                                                        >  2:2013999/1‑100
   ATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGC                                                                                                        >  1:1692248/1‑100
   ATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGC                                                                                                        >  1:2810361/1‑100
      TCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTG                                                                                                     <  2:1328527/100‑1
      TCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTG                                                                                                     >  1:311702/1‑100
       CTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGA                                                                                                    >  1:321567/1‑100
                         AATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGG                                                                                  <  2:789078/100‑1
                         AATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGG                                                                                  <  2:788743/100‑1
                          ATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGC                                                                                 <  1:1444348/100‑1
                          ATTTTGTGGCTGTCGCGGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGC                                                                                 <  2:1902169/100‑1
                             TTGTGGCTGTCGCTGATGGTTATCTTTTGAAAAAATAAACAGATGGTAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                              <  1:904403/100‑1
                             TTGTGGCAGTCGCTGATGGTTATCTTTTGAAAAGACAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                              <  1:1120092/100‑1
                                TGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTT                                                                           <  2:113658/100‑1
                                  GCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTT                                                                         <  1:12819/100‑1
                                   CTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTA                                                                        <  2:2380372/100‑1
                                   CTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTA                                                                        <  2:2190172/100‑1
                                   CTGTCGCTGATGGTTATCTTTTTAAAAAATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTT                                                                          <  1:1413745/98‑1
                                   CTGTCGCTGATGGTTATATTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTA                                                                        <  1:1108966/100‑1
                                    TGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTAC                                                                       <  1:136198/100‑1
                                    TGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTAC                                                                       <  2:250896/100‑1
                                    TGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTAC                                                                       <  1:2368747/100‑1
                                     GTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACC                                                                      <  2:592754/100‑1
                                        GCTGATGGTTATCTTATTAAAAAATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCT                                                                    <  1:291240/99‑1
                                                                                                     GCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAAT      >  2:2409689/1‑100
                                                                                                     GCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAAT      >  1:2454483/1‑100
                                                                                                      CCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATT     >  2:2576777/1‑100
                                                                                                       CTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTC    <  2:405416/100‑1
                                                                                                        TGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCC   <  2:1745575/100‑1
                                                                                                        TGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCC   >  2:1717547/1‑100
                                                                                                        TGACCGCATAAAGCAGTCAGGCATTTTTTTACCCTTCGGGAGAATTCCCCATCTGGTTATCTTTTAAAAAGATAACCATCAGCGACAGCTACAAAATTCC   <  1:552065/100‑1
                                                                                                         GATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCG  <  2:1511415/100‑1
                                                                                                                                                                                                             
TTAATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/884811‑884917
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcctgaTCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCG  <  NC_000913/884930‑884833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.