New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4572060 =110 (1.060)10 (0.110) 7/158 NT 9.7% intergenic (+145/‑354) yjiS/yjiT DUF1127 family protein/pseudogene
?NC_000913 4572097 = 89 (0.970)intergenic (+182/‑317) yjiS/yjiT DUF1127 family protein/pseudogene
Rejected: Frequency below cutoff threshold.

TTTAACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4572165‑4572060
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttttttgacTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTT  >  NC_000913/4572097‑4572195
                                                                                                                                                                                                             
TTTAACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTT                                                                                                           >  2:1185062/1‑100
 TTAACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTT                                                                                                          >  1:307038/1‑100
  TAACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTT                                                                                                         >  2:1284631/1‑100
   AACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTT                                                                                                        <  1:132507/100‑1
    ACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTG                                                                                                       <  2:830098/100‑1
    ACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTG                                                                                                       <  1:952784/100‑1
     CTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGA                                                                                                      >  2:528990/1‑100
     CTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGA                                                                                                      >  1:2455445/1‑100
     CTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGA                                                                                                      >  2:1386639/1‑100
      TTTCCAGGGTATAAAACTATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGAC                                                                                                     >  1:186624/1‑100
      TTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGAC                                                                                                     <  1:2202061/100‑1
      TTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGAC                                                                                                     <  2:2027650/100‑1
      TTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAACTAATCACTGTGCGTTTTTTGAC                                                                                                     <  1:1690378/100‑1
        TCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCCTTCAATAAACACATGTAATTACTGTGCGTTTTTTttct                                                                                                    >  1:316847/1‑95
           AGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTttttttt                                                                                                 >  1:1841713/1‑92
                                             CGAATAATGAGAGTTGTAAATTCAGTCAAAAAACACAAGTAATAAGTGTACGTTTTTTGACTTACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTC                                                              >  1:1036046/1‑100
                                                                 GTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGTTTGATTTTACAACTCTCATTATTCGCTATTGTGTTGTTTCTCTAGTTGTTTTATACCCTG                                          >  1:1459501/1‑100
                                                                  TCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCCTTATTCGCTATTGTGCAGTTTCTCTAATTCTTTTATACCCT                                           >  1:2655976/1‑98
                                                                   CAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCT                                           >  1:234984/1‑97
                                                                   CAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCAGTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGA                                        >  1:1862723/1‑100
                                                                    AGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAA                                       >  2:1892532/1‑100
                                                                     GTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAA                                      >  1:746461/1‑100
                                                                     GTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAA                                      >  2:2838272/1‑100
                                                                            AACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAAT                               <  1:870217/100‑1
                                                                            AACACAAGTAATCACTGTGCGTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAAT                               <  1:870309/100‑1
                                                                                                GTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTT           >  1:295470/1‑100
                                                                                                GTTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTT           >  1:333076/1‑100
                                                                                                 TTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTT          <  1:1608584/100‑1
                                                                                                 TTTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTT          <  2:2014626/100‑1
                                                                                                  TTTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTG         <  2:2913575/100‑1
                                                                                                   TTTTGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGA        <  1:2633334/100‑1
                                                                                                      TGACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTG     >  1:917165/1‑100
                                                                                                       GACTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTtttttt    >  1:1759847/1‑94
                                                                                                         CTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTT  >  2:40321/1‑100
                                                                                                         CTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTT  >  1:1603801/1‑100
                                                                                                         CTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTT  <  1:2690414/100‑1
                                                                                                                                                                                                             
TTTAACTTTCCAGGGTATAAAACAATTAGAGAAACTGCACAATAGCGAATAATGAGAGTTGTAAAGTCAGTCAAAAAACACAAGTAATCACTGTGCGTTTTTTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4572165‑4572060
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttttttgacTGACTTTACAACTCTCATTATTCGCTATTGTGCAGTTTCTCTAATTGTTTTATACCCTGGAAAGTTAAATGTCAGCTACTGAATACTTTTTGATTGTTT  >  NC_000913/4572097‑4572195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.