New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	411078 =	NA (NA)	5 (0.050)	4/164	NT	NA	noncoding (1/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913	411111 =	NA (NA)					noncoding (34/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences

AGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/411183‑411078 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCA  >  NC_000913/411111‑411209                                                                                                                                                                                                                 AGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCA                                                                                                             <  1:3159021/100‑1  GGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCAT                                                                                                            >  1:1241614/1‑100   GCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC                                                                                                           <  2:2912292/100‑1   GCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATC                                                                                                           >  2:2445422/1‑100      TCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGG                                                                                                        <  2:390181/100‑1       CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC                                                                                                       >  1:2691342/1‑100        GGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC                                                                                                       <  1:458629/99‑1                                                                     tgcAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAG                                         >  2:3044219/4‑100                                                                        AGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCT                                     >  2:1614230/1‑99                                                                         GGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCC                                   >  2:333796/1‑100                                                                          GCCTGATAAGACGCGGCAAGCGTCTTATCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCG                                  >  1:673147/1‑100                                                                           CCTGATAAGACGCGGCAAGCGTCGCATCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGA                                 >  1:1933514/1‑100                                                                                                    ATCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTC        >  2:1248426/1‑100                                                                                                    ATCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGT         >  2:2595326/1‑99                                                                                                     TCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCT       <  1:1483964/100‑1                                                                                                     TCAGGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCT       <  1:1980103/100‑1                                                                                                        GGCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTAT    >  2:3217481/1‑100                                                                                                         GCCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATC   >  2:792906/1‑100                                                                                                          CCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCA  <  2:1651513/100‑1                                                                                                          CCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCA  <  1:1932726/100‑1                                                                                                          CCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCA  >  1:1917526/1‑100                                                                                                                                                                                                                 AGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/411183‑411078 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAAAAGGTGCCAGAAC‑‑CGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCA  >  NC_000913/411111‑411209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.