New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 411078 =NA (NA)5 (0.050) 4/164 NT NA noncoding (1/191 nt) REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 411111 = NA (NA)noncoding (34/191 nt) REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 155 total aligned reads displayed.

CGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCG  >  NC_000913/410979‑411177
                                                                                                   |                                                                                                   
tgataagacgcggcaagcgtcgcatcaggcatcggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagg                                                                                                     <  2:1651513‑M1/1‑1 (MQ=255)
tgataagacgcggcaagcgtcgcatcaggcatcggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagg                                                                                                     <  1:1932726‑M1/1‑1 (MQ=255)
tgataagacgcggcaagcgtcgcatcaggcatcggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagg                                                                                                     >  1:1917526‑M1/100‑100 (MQ=255)
cGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATg                                                                                                     >  1:2599873/1‑100 (MQ=255)
 gataagacgcggcaagcgtcgcatcaggcatcggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagGc                                                                                                    >  2:792906‑M1/99‑100 (MQ=255)
 gCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGc                                                                                                    <  1:392894/100‑1 (MQ=255)
  ccGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGcc                                                                                                   <  1:2983387/100‑1 (MQ=255)
  ccGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGcc                                                                                                   >  1:502796/1‑100 (MQ=255)
  ataagacgcggcaagcgtcgcatcaggcatcggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagGcc                                                                                                   >  2:3217481‑M1/98‑100 (MQ=255)
    ggTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCAGGcatc                                                                                                 <  1:457159/100‑4 (MQ=255)
     gTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGa                                                                                                <  1:2836118/100‑1 (MQ=255)
     gTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGa                                                                                                <  2:2464563/100‑1 (MQ=255)
     gTGCGTAAGGCGAAGAACGGTGATTACAGCGACGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATg                                                                                                     <  2:264351/95‑1 (MQ=255)
       gCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATg                                                                                              <  1:1596616/100‑1 (MQ=255)
       acgcggcaagcgtcgcatcaggcatcggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagGCCTGAt                                                                                               >  2:2595326‑M1/93‑99 (MQ=255)
         gTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCg                                                                                            >  2:2103061/1‑100 (MQ=255)
             ggCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGc                                                                                        >  2:1241607/1‑100 (MQ=255)
                    cACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCcgc                                                                                 >  1:446355/1‑100 (MQ=255)
                      cGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGt                                                                               <  1:1968349/100‑1 (MQ=255)
                        gTGACTACAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCAGACGAGTAAAATACGTAGGCAATTGGTGTATCATGCCTGATGCGACGCTTGGcgcg                                                                                <  2:1531586/97‑1 (MQ=37)
                          gATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTa                                                                           >  2:671066/1‑100 (MQ=255)
                           aTTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                          <  2:16764/100‑1 (MQ=255)
                           aTTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                          <  2:2150033/100‑1 (MQ=255)
                            ttCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                         <  1:2129033/100‑1 (MQ=255)
                             tCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                        >  1:1493905/1‑100 (MQ=255)
                             tCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                        <  1:2750296/100‑1 (MQ=255)
                              ccAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                       >  2:1022113/1‑100 (MQ=255)
                               cAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                      >  2:1203417/1‑100 (MQ=255)
                               cAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                      <  1:2237149/100‑1 (MQ=255)
                               cAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                      >  1:2997826/1‑100 (MQ=255)
                               cAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                       <  2:307842/99‑1 (MQ=255)
                                 ncggccTGCGCGGCGCTGCGAGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGTcc                                                                    >  2:720876/2‑100 (MQ=37)
                                  cggcgTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                   >  2:913596/1‑100 (MQ=255)
                                  cggagTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                   <  1:3044988/100‑1 (MQ=255)
                                   ggcgTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                  >  2:2223784/1‑100 (MQ=255)
                                   agcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcaccttttgtagGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                   >  2:1614230‑M1/65‑99 (MQ=255)
                                    gcgTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATACCTGATGCGACGCCTGCCGCGTCATATCAGGCCTAc                                                                 >  2:1306450/1‑100 (MQ=255)
                                     cttattgccggatgcggcgtgaacgccttatccgccctacgcggttctggcacattttgcagGCCTGATGCGACGCTTGCCGCGTCTTATCAGgcctgca                                                                >  2:3044219‑M1/63‑97 (MQ=255)
                                      gTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACaa                                                               >  2:1932714/1‑100 (MQ=255)
                                         cgcgGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAg                                                            >  2:3218690/1‑100 (MQ=255)
                                         cgcgGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAg                                                            <  1:1599922/100‑1 (MQ=255)
                                          gcggcgCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAgg                                                           >  1:1316997/1‑100 (MQ=255)
                                          gcggcgCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAg                                                            >  1:325215/1‑99 (MQ=255)
                                          gcggcgCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCGACAAAAgg                                                           <  2:1414469/100‑1 (MQ=255)
                                            ggcgCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTg                                                         <  2:2900606/100‑1 (MQ=255)
                                             gcgcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGc                                                        >  2:125001/1‑100 (MQ=255)
                                             gcgcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGc                                                        <  1:1207424/100‑1 (MQ=255)
                                             gcgcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGc                                                        <  1:3073419/100‑1 (MQ=255)
                                              cgcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGcc                                                       <  2:1284703/100‑1 (MQ=255)
                                               gcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGcc                                                       <  1:2030879/99‑1 (MQ=255)
                                               gcTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCa                                                      >  1:1264308/1‑100 (MQ=255)
                                                   cGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAAc                                                  <  1:2358088/100‑1 (MQ=255)
                                                    gTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAAcc                                                 <  1:686166/100‑1 (MQ=255)
                                                    gTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAAGTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAAcc                                                 <  1:3147995/100‑1 (MQ=255)
                                                     tGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCg                                                >  1:919405/1‑100 (MQ=255)
                                                       gTTATGCCAACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGTTGCGACGCTTGCCGCGTCTTATCATGCCTACAAAAGGTGCCAGAACCGTa                                              <  2:1108535/100‑1 (MQ=25)
                                                        ttATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAg                                             <  2:2084818/100‑1 (MQ=255)
                                                         tATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAgg                                            <  1:2513543/100‑1 (MQ=255)
                                                            ggCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCg                                         <  2:2052754/100‑1 (MQ=255)
                                                            ggCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCg                                         >  2:2756829/1‑100 (MQ=255)
                                                             tccACAATAGTAAAAAACTTATTCAAATGGCGCATCATGCTTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCg                                         <  1:1402241/98‑1 (MQ=21)
                                                             gCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCgg                                        >  1:166770/1‑100 (MQ=255)
                                                             gCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCg                                         >  1:975244/1‑99 (MQ=255)
                                                               cacaAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGAt                                      <  1:2054135/100‑1 (MQ=255)
                                                                acaAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATa                                     >  2:934854/1‑100 (MQ=255)
                                                                 caAGCGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGCCGCTTGCCGCGACTTCTCAGGCCTACAAAAGGTGCCAGAACCGTAGGACGAATaa                                    >  1:664446/1‑100 (MQ=38)
                                                                   agagTAAAAAACGTGGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAgg                                  <  2:2531818/100‑1 (MQ=255)
                                                                   agagTAAAAAACGTCGGCAATTGGCCCATCATGCCTGATGCGTCGCGTGCCGCGTCATATCCGGCCTACAAAAGGTGCCAGAGCCGTAGGCCGGATAAgg                                  <  1:1470217/100‑1 (MQ=25)
                                                                   agagTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAgg                                  <  1:1256114/100‑1 (MQ=255)
                                                                     agTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGc                                 >  1:1184593/1‑99 (MQ=255)
                                                                      gTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGt                               >  1:478527/1‑100 (MQ=255)
                                                                       tAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGtt                              >  1:2803706/1‑100 (MQ=255)
                                                                        aaaaaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTc                             >  1:750155/1‑100 (MQ=255)
                                                                        aaaaaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTc                             >  1:518685/1‑100 (MQ=255)
                                                                         aaaaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCa                            >  1:1120876/1‑100 (MQ=255)
                                                                         aaaaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCa                            >  2:168239/1‑100 (MQ=255)
                                                                          aaaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGAATAAGGCGTTCAc                           >  2:542293/1‑100 (MQ=255)
                                                                           aaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcg                          <  2:2717464/100‑1 (MQ=255)
                                                                           aaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcg                          >  2:347287/1‑100 (MQ=255)
                                                                            aaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCAcgc                         <  1:2062863/100‑1 (MQ=255)
                                                                                 aGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCAt                    >  2:1802560/1‑100 (MQ=255)
                                                                                  ggCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATc                   >  1:230228/1‑100 (MQ=255)
                                                                                  ggCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATc                   >  2:795911/1‑100 (MQ=255)
                                                                                   gCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAAGTGCCAGAACCGTAGGCCGGATAAGACGTTTACGCCGCAt                    >  2:1332369/1‑98 (MQ=255)
                                                                                    cAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCg                 >  2:391415/1‑100 (MQ=255)
                                                                                    cAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGCATGCCGGATAAAGCGTTCACGCCCCATACg                 >  1:182373/1‑100 (MQ=18)
                                                                                     aaTTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCgg                <  1:735108/100‑1 (MQ=255)
                                                                                      aTTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCggg               <  2:1324712/100‑2 (MQ=255)
                                                                                         ggCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAt            >  1:1153007/1‑100 (MQ=255)
                                                                                          gcgcATCATGCCTGATGCGACGCTTGCCGCTTCTTATCAGGCCTACAAAAAGTGCCAGAACCGTAGGCCGGATAAAGCGTTCACGCCGCATCCGCCAATa           >  1:1828923/1‑100 (MQ=17)
                                                                                          gcgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGTCGTTCACGCCGCATCCGGCAATa           >  1:1283198/1‑100 (MQ=255)
                                                                                          gcgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATa           <  2:1202151/100‑1 (MQ=255)
                                                                                          gcgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATa           <  2:919400/100‑1 (MQ=255)
                                                                                           cgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATaa          >  1:788107/1‑100 (MQ=255)
                                                                                            gcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAg         >  1:996344/1‑100 (MQ=255)
                                                                                            gcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCACGCCTACAAAAGGTGCCAGAACCGTATGCCGGATAAGGCGTGCACGCCGCATCCGGCAATAAg         >  2:1236632/1‑100 (MQ=255)
                                                                                              atcatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGt        <  2:2927383/99‑1 (MQ=255)
                                                                                               tcatGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGc      >  1:1651523/1‑100 (MQ=255)
                                                                                                 atGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTg       >  1:226666/1‑97 (MQ=255)
                                                                                                  tGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGAGAAGGCGTTCACGCCGCATCCGGCAATAAGAGCTc    >  2:2307753/1‑99 (MQ=255)
                                                                                                   |                                                                                                   
CGCCGGTGCGTAAGGCGAAGCACGGTGATTCCAGCGGCGTACGCGGCGCTGCGTGGTTATGGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCG  >  NC_000913/410979‑411177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.