New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1816343	NA (NA)	4 (0.030)	4/172	NT	NA	noncoding (159/189 nt)	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913	= 1816373	NA (NA)					noncoding (189/189 nt)	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1816274‑1816343 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCG  <  NC_000913/1816373‑1816273                                                                                                                                                                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCGGATGCGGCGTGAACCTTGCATCCGGC                                                                         <  2:836637/100‑1  CATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCG                                                                        <  1:2270636/100‑1    TCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGAT                                                                      <  1:334867/100‑1                        CAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCGCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCG                                                  >  1:1238671/1‑100                                                                       GCCAGATGCGGCGTGAACCTTGCATCTGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGC   >  1:1971744/1‑100                                                                       GCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGC   >  1:2183332/1‑100                                                                        CCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCG  >  1:1931895/1‑100                                                                         CAGATGCGGCGTGAACCTTGCATCCGGCGATAAATTCATACAAAGGCGGCGTAACTGAGCCGCTTGAGACTGCTGACAAACGCAAAAATGCC         >  2:2932078/1‑92                                                                                                                                                                             GCATCAGGCAGTTTTGCGTTTGTCAGCAGTCTCAAGCGGCGCAGTTACGCCGCCTTTGTAGGAATTAATCgcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1816274‑1816343 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCAGATGCGGCGTGAACCTTGCATCCGGCGATTAATTCCTACAAAGGCGGCGTAACTGCGCCGCTTGAGACTGCTGACAAACGCAAAACTGCCTGATGCG  <  NC_000913/1816373‑1816273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.