New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2393090 =	NA (NA)	4 (0.040)	3/168	NT	NA	intergenic (‑49/+115)	nuoM/nuoL	NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L
	?	NC_000913	2393112 =	NA (NA)					intergenic (‑71/+93)	nuoM/nuoL	NADH:ubiquinone oxidoreductase, membrane subunit M/NADH:ubiquinone oxidoreductase, membrane subunit L

TGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2393193‑2393090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattcTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAAC  >  NC_000913/2393112‑2393209                                                                                                                                                                                                            TGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGA                                                                                                        >  2:2340499/1‑100  GGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAA                                                                                                       >  1:1570014/1‑100   GGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAA                                                                                                       <  1:1184615/99‑1    GATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTACATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATT                                                                                                     >  2:1537074/1‑100     ATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTC                                                                                                    >  2:522049/1‑100                                                    GGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATC                                                     >  2:10937/1‑100                                                    GGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATC                                                     >  2:11606/1‑100                                                          TCCGACACTACCCCAAGTACGAAGAGAATTTTCTGTCGTGAGTATTCTATTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCT                                               >  2:729867/1‑100                                                                             CGAAGAGAATTTTCTGTCGTGAGAATTATCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGACTTATCCGACCTACGTTCTTATATGCCCAG                             >  2:697600/1‑99                                                                                                    AATTCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTC     <  1:826558/100‑1                                                                                                       TCTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAAC  <  1:1938039/100‑1                                                                                                                                                                                                            TGGGATTGCCCCTGGGCATATAAGAACGTAGGTCGGATAAGCCGCCTTCGCGGTGCATCCGACACTACCCCCAGTCCGAAGAGAATTTTCTGTCGTGAGAATTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2393193‑2393090 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aattcTCTTCGGACTGGGGGTAGTGTCGGATGCACCGCGAAGGCGGCTTATCCGACCTACGTTCTTATATGCCCAGGGGCAATCCCACAATCCTTAACTCAAC  >  NC_000913/2393112‑2393209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.