New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2597686 =	NA (NA)	9 (0.110)	7/166	NT	NA	noncoding (14/46 nt)	REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	2597714 =	NA (NA)					noncoding (42/46 nt)	REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences

TACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2597788‑2597686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccga‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT  >  NC_000913/2597714‑2597812                                                                                                                                                                                                             TACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATC                                                                                                         <  1:834647/100‑1  ACGCAAACGTGTGCGTCTGCAGGAATACGTGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACTCCGCATCC                                                                                                        <  2:1287394/100‑1  ACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCC                                                                                                        >  1:1450675/1‑100   CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCG                                                                                                       >  2:307488/1‑100   CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCG                                                                                                       >  2:1789191/1‑100   CGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCG                                                                                                       >  2:1307311/1‑100   CGCAAACGTGTGCGTCTGCAGCAAAACGCGTTTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCC                                                                                                        <  2:1605120/99‑1    GCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATACGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA                                                                                                      <  2:1521136/100‑1       AACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATGCGGCGTGAACGCCTTATCCGA‑ACT                                                                                                  <  2:486926/100‑1                                       GCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATGCGGCGTGAACGCCTTATCCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACC                                                                  <  1:794500/100‑1                                                  CACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGATCACGCCGCATCCGACAAAACATCCGGCAAACAAATTTCGTGCGAATTACCGCTAAAATCG                                                        >  1:1943113/1‑100                                                                          GTTCGGATAAGGCGTTCACGCCGAATCCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAGTTACCGCAAAAATCGCGTTTTCCTGCAGACGCACACGTT                                >  1:1855691/1‑99                                                                             CGGATAAGGCGTTCACGCCGCATCCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCG                            >  1:1705163/1‑100                                                                              GGATAAGGCGTTCACGCCGCGTCCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGT                           >  2:1456981/1‑100                                                                              GGATAAGGCGTTCACGCCGCATCCGA‑ACTGCGTCCGACAAACAAATTTCGTGCGAATTACCGCTGAAATCGAGTCTTCCTGCCGACGCACACGTTTGCG                            >  2:1169967/1‑99                                                                              GGATAAGGCGTTCACGCCGCATCCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGT                           >  2:1807118/1‑100                                                                              GGATAAGGCGTTCACGCCGCATCCGA‑ACTACGTCCGACAAACAAACTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGT                           >  1:1372225/1‑100                                                                                  AAGGCGTTCACGCCGCATCCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCA                       >  1:1837461/1‑100                                                                                                    CCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCG     >  1:2387281/1‑100                                                                                                    CCGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCG     <  2:2349477/100‑1                                                                                                     CGA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGG    <  1:256243/100‑1                                                                                                      GA‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGA   <  2:1851570/100‑1                                                                                                       A‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT  <  1:1687373/100‑1                                                                                                       A‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT  <  2:1380358/100‑1                                                                                                                                                                                                             TACGCAAACGTGTGCGTCTGCAGGAAAACGCGATTTTAGCGGTAATTCGCACGAAATTTGTTTGTCGGACGTAGTTCGGATAAGGCGTTCACGCCGCATCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2597788‑2597686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccga‑ACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGAT  >  NC_000913/2597714‑2597812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.