New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3299608122 (0.890)20 (0.170) 7/158 NT 15.0% coding (308/444 nt) yhbP UPF0306 family protein
?NC_000913 = 3299630 118 (0.970)coding (286/444 nt) yhbP UPF0306 family protein

AGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3299500‑3299608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaagcgacCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  NC_000913/3299630‑3299532
                                                                                                                                                                                                                
AGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCG                                                                                                              <  1:1252019/100‑1
 GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGG                                                                                                             >  1:100371/1‑100
 GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGG                                                                                                             >  1:635691/1‑100
 GCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGG                                                                                                             >  1:2036147/1‑100
  CCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            >  2:1455110/1‑100
  CCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            <  1:54298/100‑1
  CCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            <  1:55689/100‑1
  CCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGA                                                                                                            <  1:146258/100‑1
   CAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAA                                                                                                           >  1:857582/1‑100
   CAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAA                                                                                                           >  1:3408397/1‑100
   CAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAA                                                                                                           >  1:3395197/1‑100
    nAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAA                                                                                                          >  1:3306675/2‑100
    AAATCATTTTTTTACCAAAGCCCAGCTTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAA                                                                                                          <  2:1659985/100‑1
     AATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAG                                                                                                         <  1:3709106/100‑1
      ATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACACCATTCTGGCAACCGGAAAGC                                                                                                        <  2:2335271/100‑1
      ATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACACCATTCTGGCAACCGGAAAGC                                                                                                        <  2:2335709/100‑1
        CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAACGCGA                                                                                                      >  2:774104/1‑100
        CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGA                                                                                                      >  2:3662828/1‑100
        CATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGA                                                                                                      >  2:2531201/1‑100
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:3448992/100‑1
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:2870922/100‑1
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  2:3703017/100‑1
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:697734/100‑1
                                        TGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  1:801371/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:2733423/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:723098/100‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTC                                                                      <  2:3707877/99‑1
                                         GAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCCACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  1:1703878/100‑1
                                          AATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCG                                                                    <  2:3794880/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  1:3247423/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  1:26682/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:3148077/100‑1
                                           ATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:2656536/100‑1
                                            TTTGATTTCATCGTGCCGGATTGCCCACGCCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCC                                                                     <  2:2576830/97‑1
                                            TTTGATTTCATCGAGCGGGATGTCCAACGCCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGG                                                                   <  2:1039551/99‑1
                                              TGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTG                                                                <  1:1820077/100‑1
                                                ATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCC                                                              <  2:1957150/100‑1
                                                ATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCC                                                              <  2:1351926/100‑1
                                                            CGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCG                                                  <  1:2493118/100‑1
                                                                                                   GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAGATCAAATTC           >  2:3787583/1‑100
                                                                                                   GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCGAAT             >  2:2815835/1‑98
                                                                                                   GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTC           >  1:1834769/1‑100
                                                                                                   GGAAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTC           >  1:771609/1‑100
                                                                                                     AAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCAC         >  1:2438571/1‑100
                                                                                                     AAAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCAC         >  1:2399716/1‑100
                                                                                                      AAGCGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACC        <  2:3133437/100‑1
                                                                                                         CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  2:2018271/100‑1
                                                                                                         CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  2:1067943/100‑1
                                                                                                         CGACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGAC     <  2:2429723/100‑1
                                                                                                          GACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACA    >  2:2821326/1‑100
                                                                                                          GACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACA    <  1:237481/100‑1
                                                                                                           ACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAA   >  1:589395/1‑100
                                                                                                           ACCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTATGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAA   >  2:2226899/1‑100
                                                                                                            CCTCGCGCGGAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  >  2:3167307/1‑100
                                                                                                                                                                                                                
AGCCAAATCATTTTTTTACCAAAGCCCAGCGTGTTGTCGGTGAATTTGATTTCATCGAGCCGGATTTCCCACACCGGGGCCGACAGCATTCTGGCAACCGGAAAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3299500‑3299608
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaagcgacCTCGCGCGCAAGGCGTACAATCGTCGCTTTCCGGTTGCCAGAATGCTGTCGGCCCCGGTGTGGGAAATCCGGCTCGATGAAATCAAATTCACCGACAAC  <  NC_000913/3299630‑3299532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.